Hb_013591_010

Information

Type -
Description -
Location Contig13591: 1-1577
Sequence    

Annotation

kegg
ID gmx:100807806
description mitogen-activated protein kinase kinase kinase 1-like
nr
ID KHN39171.1
description Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A0B2RXK3
description Mitogen-activated protein kinase kinase kinase 1 OS=Glycine soja GN=glysoja_027976 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013591_010 0.0 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
2 Hb_002422_020 0.0089350797 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
3 Hb_137612_010 0.0371550745 - - cytochrome P450, putative [Ricinus communis]
4 Hb_064692_010 0.0665021673 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_041534_010 0.0670707115 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
6 Hb_010573_030 0.0737378955 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007728_010 0.0763231401 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_019978_010 0.0821868379 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
9 Hb_004724_290 0.0925818743 transcription factor TF Family: NAC -
10 Hb_000134_010 0.0935612251 - - -
11 Hb_003674_010 0.0947199229 - - purine transporter, putative [Ricinus communis]
12 Hb_036754_040 0.1034196546 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_011429_010 0.1053841423 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
14 Hb_000028_360 0.1060953537 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_002006_110 0.1086872992 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
16 Hb_010136_020 0.1110452137 - - stress-induced receptor-like kinase [Medicago truncatula]
17 Hb_003071_040 0.1145632893 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
18 Hb_000731_020 0.1197916642 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
19 Hb_184752_010 0.1202922914 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
20 Hb_000338_020 0.1222823588 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]

Gene co-expression network

sample Hb_013591_010 Hb_013591_010 Hb_002422_020 Hb_002422_020 Hb_013591_010--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_013591_010--Hb_137612_010 Hb_064692_010 Hb_064692_010 Hb_013591_010--Hb_064692_010 Hb_041534_010 Hb_041534_010 Hb_013591_010--Hb_041534_010 Hb_010573_030 Hb_010573_030 Hb_013591_010--Hb_010573_030 Hb_007728_010 Hb_007728_010 Hb_013591_010--Hb_007728_010 Hb_002422_020--Hb_137612_010 Hb_002422_020--Hb_010573_030 Hb_002422_020--Hb_007728_010 Hb_002422_020--Hb_041534_010 Hb_002422_020--Hb_064692_010 Hb_137612_010--Hb_007728_010 Hb_000134_010 Hb_000134_010 Hb_137612_010--Hb_000134_010 Hb_137612_010--Hb_041534_010 Hb_137612_010--Hb_064692_010 Hb_064692_010--Hb_041534_010 Hb_000338_020 Hb_000338_020 Hb_064692_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_064692_010--Hb_157957_010 Hb_041534_010--Hb_000338_020 Hb_041534_010--Hb_157957_010 Hb_010573_030--Hb_007728_010 Hb_010573_030--Hb_137612_010 Hb_010573_030--Hb_000134_010 Hb_094839_010 Hb_094839_010 Hb_010573_030--Hb_094839_010 Hb_007728_010--Hb_000134_010 Hb_165552_020 Hb_165552_020 Hb_007728_010--Hb_165552_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.58598 0.314146 0.669774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis