Hb_013607_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig13607: 16218-17735
Sequence    

Annotation

kegg
ID rcu:RCOM_1033280
description DNA binding protein, putative
nr
ID XP_002513853.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LES3
description ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1
trembl
ID B9RJD4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1033280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013607_020 0.0 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
2 Hb_166937_010 0.0016013403 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
3 Hb_064476_010 0.0039987914 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
4 Hb_000771_010 0.0057494596 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000243_270 0.0080213521 - - Pectinesterase-2 precursor, putative [Ricinus communis]
6 Hb_001300_110 0.0090522142 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
7 Hb_001579_080 0.0096823807 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_007524_020 0.0112711698 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
9 Hb_015754_010 0.0117054454 - - Galactose oxidase precursor, putative [Ricinus communis]
10 Hb_000185_190 0.0132372706 - - hypothetical protein L484_017526 [Morus notabilis]
11 Hb_000506_060 0.0148742123 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
12 Hb_001031_130 0.0172178879 - - zinc finger protein, putative [Ricinus communis]
13 Hb_003363_100 0.0172349665 - - -
14 Hb_002081_110 0.0173090978 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
15 Hb_171420_010 0.0198467193 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
16 Hb_168078_010 0.0202628084 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
17 Hb_000042_410 0.0207539718 - - Patatin precursor, putative [Ricinus communis]
18 Hb_014549_030 0.0212737955 - - receptor-kinase, putative [Ricinus communis]
19 Hb_004994_270 0.0221049364 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
20 Hb_027802_030 0.0229549944 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]

Gene co-expression network

sample Hb_013607_020 Hb_013607_020 Hb_166937_010 Hb_166937_010 Hb_013607_020--Hb_166937_010 Hb_064476_010 Hb_064476_010 Hb_013607_020--Hb_064476_010 Hb_000771_010 Hb_000771_010 Hb_013607_020--Hb_000771_010 Hb_000243_270 Hb_000243_270 Hb_013607_020--Hb_000243_270 Hb_001300_110 Hb_001300_110 Hb_013607_020--Hb_001300_110 Hb_001579_080 Hb_001579_080 Hb_013607_020--Hb_001579_080 Hb_166937_010--Hb_000771_010 Hb_166937_010--Hb_064476_010 Hb_166937_010--Hb_001579_080 Hb_166937_010--Hb_000243_270 Hb_015754_010 Hb_015754_010 Hb_166937_010--Hb_015754_010 Hb_064476_010--Hb_000243_270 Hb_064476_010--Hb_001300_110 Hb_007524_020 Hb_007524_020 Hb_064476_010--Hb_007524_020 Hb_064476_010--Hb_000771_010 Hb_000771_010--Hb_001579_080 Hb_000771_010--Hb_015754_010 Hb_000185_190 Hb_000185_190 Hb_000771_010--Hb_000185_190 Hb_000243_270--Hb_001300_110 Hb_000243_270--Hb_007524_020 Hb_000506_060 Hb_000506_060 Hb_000243_270--Hb_000506_060 Hb_003363_100 Hb_003363_100 Hb_000243_270--Hb_003363_100 Hb_001300_110--Hb_007524_020 Hb_001300_110--Hb_000506_060 Hb_001300_110--Hb_003363_100 Hb_001579_080--Hb_015754_010 Hb_001579_080--Hb_000185_190 Hb_001031_130 Hb_001031_130 Hb_001579_080--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001579_080--Hb_002081_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0418519 0.0244937 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis