Hb_013607_030

Information

Type -
Description -
Location Contig13607: 20368-23407
Sequence    

Annotation

kegg
ID rcu:RCOM_1033290
description hypothetical protein
nr
ID XP_012078123.1
description PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
swissprot
ID Q84WN0
description Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2
trembl
ID B9RJD5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033290 PE=4 SV=1
Gene Ontology
ID GO:0009073
description PREDICTED: uncharacterized protein At4g37920, chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10037: 20232-21626 , PASA_asmbl_10038: 23999-24373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013607_030 0.0 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
2 Hb_027295_050 0.0733677995 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
3 Hb_004100_080 0.0818045102 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006502_090 0.0827638782 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
5 Hb_000317_050 0.0852835409 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
6 Hb_002013_020 0.0863439316 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
7 Hb_002154_100 0.0866243519 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
8 Hb_000866_260 0.0871502259 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
9 Hb_022693_140 0.0890328055 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
10 Hb_000856_110 0.0902931576 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
11 Hb_000804_040 0.0907698874 - - protein with unknown function [Ricinus communis]
12 Hb_008554_030 0.0913232581 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
13 Hb_000917_060 0.0918970855 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
14 Hb_007389_010 0.0920278054 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
15 Hb_000723_040 0.0927396004 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000329_320 0.0928804821 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
17 Hb_023386_020 0.0929898336 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
18 Hb_001860_050 0.093403772 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
19 Hb_032264_070 0.0944779308 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
20 Hb_001163_050 0.0947059857 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_013607_030 Hb_013607_030 Hb_027295_050 Hb_027295_050 Hb_013607_030--Hb_027295_050 Hb_004100_080 Hb_004100_080 Hb_013607_030--Hb_004100_080 Hb_006502_090 Hb_006502_090 Hb_013607_030--Hb_006502_090 Hb_000317_050 Hb_000317_050 Hb_013607_030--Hb_000317_050 Hb_002013_020 Hb_002013_020 Hb_013607_030--Hb_002013_020 Hb_002154_100 Hb_002154_100 Hb_013607_030--Hb_002154_100 Hb_000201_100 Hb_000201_100 Hb_027295_050--Hb_000201_100 Hb_008554_030 Hb_008554_030 Hb_027295_050--Hb_008554_030 Hb_017358_030 Hb_017358_030 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_000165_250 Hb_000165_250 Hb_027295_050--Hb_000165_250 Hb_023386_020 Hb_023386_020 Hb_004100_080--Hb_023386_020 Hb_000856_110 Hb_000856_110 Hb_004100_080--Hb_000856_110 Hb_000160_210 Hb_000160_210 Hb_004100_080--Hb_000160_210 Hb_004841_010 Hb_004841_010 Hb_004100_080--Hb_004841_010 Hb_007657_010 Hb_007657_010 Hb_004100_080--Hb_007657_010 Hb_004412_010 Hb_004412_010 Hb_004100_080--Hb_004412_010 Hb_002044_080 Hb_002044_080 Hb_006502_090--Hb_002044_080 Hb_001545_120 Hb_001545_120 Hb_006502_090--Hb_001545_120 Hb_007632_030 Hb_007632_030 Hb_006502_090--Hb_007632_030 Hb_017904_010 Hb_017904_010 Hb_006502_090--Hb_017904_010 Hb_000120_790 Hb_000120_790 Hb_006502_090--Hb_000120_790 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001546_080 Hb_001546_080 Hb_000317_050--Hb_001546_080 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000318_250 Hb_000318_250 Hb_000317_050--Hb_000318_250 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0595 10.7354 13.4494 5.24642 13.9105 14.4462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4172 19.6856 12.3243 10.0918 15.9627

CAGE analysis