Hb_013607_040

Information

Type -
Description -
Location Contig13607: 23996-25852
Sequence    

Annotation

kegg
ID vvi:100252377
description pentatricopeptide repeat-containing protein At4g18520-like
nr
ID XP_012078124.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
swissprot
ID Q0WNP3
description Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
trembl
ID A0A067KCL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12015 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at4g18520

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013607_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
2 Hb_019263_020 0.0641847725 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
3 Hb_002307_170 0.0717985251 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
4 Hb_001373_180 0.0770938849 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
5 Hb_002235_280 0.0783449114 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
6 Hb_004846_070 0.0804810001 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
7 Hb_005162_070 0.0813974701 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001140_220 0.0873221567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_008695_100 0.0893606244 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
10 Hb_011534_030 0.0933032642 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
11 Hb_003053_020 0.0944979629 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
12 Hb_003020_220 0.0946096152 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
13 Hb_009803_050 0.0950875522 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_001014_230 0.0965023126 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
15 Hb_030565_030 0.0996103228 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
16 Hb_005188_020 0.1002410565 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
17 Hb_010608_050 0.101678305 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
18 Hb_000352_270 0.1059781819 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
19 Hb_000836_040 0.1064894823 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_000723_080 0.1065937215 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]

Gene co-expression network

sample Hb_013607_040 Hb_013607_040 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_002235_280 Hb_002235_280 Hb_013607_040--Hb_002235_280 Hb_004846_070 Hb_004846_070 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070 Hb_019263_020--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_002307_170--Hb_004846_070 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_000189_140 Hb_000189_140 Hb_001373_180--Hb_000189_140 Hb_001373_180--Hb_004846_070 Hb_000723_080 Hb_000723_080 Hb_001373_180--Hb_000723_080 Hb_000002_050 Hb_000002_050 Hb_001373_180--Hb_000002_050 Hb_001373_180--Hb_002235_280 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_004846_070--Hb_000002_050 Hb_004846_070--Hb_008695_100 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_005162_070--Hb_001140_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2399 3.03337 1.65377 2.40465 1.66925 4.03286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87299 7.46393 9.52577 2.91025 5.16467

CAGE analysis