Hb_013654_010

Information

Type -
Description -
Location Contig13654: 13914-17322
Sequence    

Annotation

kegg
ID pop:POPTR_0275s002101
description hypothetical protein
nr
ID CBI17536.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID U7DY37
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0275s002101g PE=4 SV=1
Gene Ontology
ID GO:0044464
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013654_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002986_110 0.0147085629 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
3 Hb_008214_010 0.031108346 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
4 Hb_008052_020 0.0311254867 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
5 Hb_002005_010 0.0313650117 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39-like isoform X2 [Populus euphratica]
6 Hb_032215_070 0.0354449923 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001427_130 0.0368777246 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
8 Hb_003010_060 0.042130789 - - Patatin T5 precursor, putative [Ricinus communis]
9 Hb_032920_080 0.0468082207 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
10 Hb_001814_090 0.0484468553 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
11 Hb_060245_010 0.0487697082 - - -
12 Hb_001476_010 0.0497947063 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
13 Hb_012120_010 0.0501783484 - - -
14 Hb_140406_010 0.0503546824 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
15 Hb_051719_020 0.0510619669 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
16 Hb_027556_030 0.0518311289 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
17 Hb_001611_030 0.0522602044 - - -
18 Hb_002400_120 0.052500734 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
19 Hb_003894_130 0.0530061924 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_013405_120 0.0533314949 - - -

Gene co-expression network

sample Hb_013654_010 Hb_013654_010 Hb_002986_110 Hb_002986_110 Hb_013654_010--Hb_002986_110 Hb_008214_010 Hb_008214_010 Hb_013654_010--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_013654_010--Hb_008052_020 Hb_002005_010 Hb_002005_010 Hb_013654_010--Hb_002005_010 Hb_032215_070 Hb_032215_070 Hb_013654_010--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_013654_010--Hb_001427_130 Hb_002986_110--Hb_002005_010 Hb_002986_110--Hb_008214_010 Hb_002986_110--Hb_008052_020 Hb_032443_030 Hb_032443_030 Hb_002986_110--Hb_032443_030 Hb_002986_110--Hb_032215_070 Hb_008214_010--Hb_008052_020 Hb_008214_010--Hb_002005_010 Hb_008214_010--Hb_032215_070 Hb_008214_010--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_008214_010--Hb_003010_060 Hb_008052_020--Hb_002005_010 Hb_008052_020--Hb_032215_070 Hb_008052_020--Hb_001427_130 Hb_008052_020--Hb_003010_060 Hb_002005_010--Hb_032215_070 Hb_002005_010--Hb_001427_130 Hb_032920_080 Hb_032920_080 Hb_002005_010--Hb_032920_080 Hb_032215_070--Hb_001427_130 Hb_032215_070--Hb_003010_060 Hb_001427_130--Hb_003010_060 Hb_010839_020 Hb_010839_020 Hb_001427_130--Hb_010839_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.9908 0 0.0120479 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.23021 0

CAGE analysis