Hb_013654_020

Information

Type -
Description -
Location Contig13654: 18507-23204
Sequence    

Annotation

kegg
ID sita:101775828
description proline-rich receptor-like protein kinase PERK2-like
nr
ID AFW85089.1
description putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID K7V4Y7
description Putative prolin-rich extensin-like receptor protein kinase family protein OS=Zea mays GN=Zm.54459 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013654_020 0.0 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
2 Hb_048653_010 0.0001422796 - - PREDICTED: mavicyanin [Jatropha curcas]
3 Hb_042239_010 0.0014049776 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_008221_010 0.0036366091 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
5 Hb_000370_050 0.0056832703 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_003702_020 0.0057188035 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
7 Hb_008092_010 0.0061626783 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
8 Hb_007592_010 0.0083092662 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
9 Hb_005426_010 0.008463453 - - polyprotein [Oryza australiensis]
10 Hb_008953_020 0.0085578465 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
11 Hb_000135_040 0.0087498779 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
12 Hb_001817_070 0.0163831596 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_002342_040 0.0188490935 - - FERONIA, partial [Arabis alpina]
14 Hb_154646_010 0.0192842016 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_122911_010 0.0260509984 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
16 Hb_000045_270 0.0317355446 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010452_030 0.0344264116 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
18 Hb_001100_020 0.0357435901 - - -
19 Hb_000238_010 0.0367295362 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_039814_010 0.0374473015 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_013654_020 Hb_013654_020 Hb_048653_010 Hb_048653_010 Hb_013654_020--Hb_048653_010 Hb_042239_010 Hb_042239_010 Hb_013654_020--Hb_042239_010 Hb_008221_010 Hb_008221_010 Hb_013654_020--Hb_008221_010 Hb_000370_050 Hb_000370_050 Hb_013654_020--Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_013654_020--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_013654_020--Hb_008092_010 Hb_048653_010--Hb_042239_010 Hb_048653_010--Hb_008221_010 Hb_048653_010--Hb_000370_050 Hb_048653_010--Hb_003702_020 Hb_048653_010--Hb_008092_010 Hb_042239_010--Hb_000370_050 Hb_042239_010--Hb_003702_020 Hb_042239_010--Hb_008092_010 Hb_042239_010--Hb_008221_010 Hb_008953_020 Hb_008953_020 Hb_008221_010--Hb_008953_020 Hb_000135_040 Hb_000135_040 Hb_008221_010--Hb_000135_040 Hb_008221_010--Hb_000370_050 Hb_000370_050--Hb_003702_020 Hb_000370_050--Hb_008092_010 Hb_007592_010 Hb_007592_010 Hb_000370_050--Hb_007592_010 Hb_005426_010 Hb_005426_010 Hb_000370_050--Hb_005426_010 Hb_003702_020--Hb_008092_010 Hb_003702_020--Hb_007592_010 Hb_003702_020--Hb_005426_010 Hb_008092_010--Hb_007592_010 Hb_008092_010--Hb_005426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.95156 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.3286 0

CAGE analysis