Hb_013654_030

Information

Type -
Description -
Location Contig13654: 36155-37009
Sequence    

Annotation

kegg
ID rcu:RCOM_1383570
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002522129.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID B9S813
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_1383570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013654_030 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_119808_020 0.158548218 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
3 Hb_015175_060 0.1658686551 - - copper transport protein atox1, putative [Ricinus communis]
4 Hb_011476_020 0.1827514052 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
5 Hb_001541_220 0.1860746149 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
6 Hb_016734_050 0.186387342 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_159327_010 0.1972259017 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
8 Hb_029508_020 0.2138883141 - - -
9 Hb_146902_010 0.2160634821 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002228_130 0.2235871552 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000281_050 0.2248955198 - - PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
12 Hb_091537_010 0.227746032 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_000541_030 0.2283257815 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011316_140 0.2319403542 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
15 Hb_000347_210 0.2366311596 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
16 Hb_012799_080 0.2379972561 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
17 Hb_001628_060 0.2384956986 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
18 Hb_001102_310 0.2515268533 - - Protein AFR, putative [Ricinus communis]
19 Hb_000896_070 0.2537811213 - - ammonium transporter, putative [Ricinus communis]
20 Hb_152640_010 0.2549703635 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]

Gene co-expression network

sample Hb_013654_030 Hb_013654_030 Hb_119808_020 Hb_119808_020 Hb_013654_030--Hb_119808_020 Hb_015175_060 Hb_015175_060 Hb_013654_030--Hb_015175_060 Hb_011476_020 Hb_011476_020 Hb_013654_030--Hb_011476_020 Hb_001541_220 Hb_001541_220 Hb_013654_030--Hb_001541_220 Hb_016734_050 Hb_016734_050 Hb_013654_030--Hb_016734_050 Hb_159327_010 Hb_159327_010 Hb_013654_030--Hb_159327_010 Hb_119808_020--Hb_001541_220 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_015175_060--Hb_016734_050 Hb_056718_010 Hb_056718_010 Hb_015175_060--Hb_056718_010 Hb_012799_080 Hb_012799_080 Hb_015175_060--Hb_012799_080 Hb_001246_080 Hb_001246_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_011476_020--Hb_159327_010 Hb_011476_020--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_011476_020--Hb_146902_010 Hb_000896_070 Hb_000896_070 Hb_011476_020--Hb_000896_070 Hb_011476_020--Hb_119808_020 Hb_001541_220--Hb_146902_010 Hb_067034_020 Hb_067034_020 Hb_001541_220--Hb_067034_020 Hb_011316_140 Hb_011316_140 Hb_001541_220--Hb_011316_140 Hb_008971_030 Hb_008971_030 Hb_001541_220--Hb_008971_030 Hb_016734_050--Hb_000541_030 Hb_016734_050--Hb_029508_020 Hb_016734_050--Hb_012799_080 Hb_016734_050--Hb_056718_010 Hb_016734_050--Hb_001246_080 Hb_159327_010--Hb_008971_030 Hb_159327_010--Hb_015175_060 Hb_004308_020 Hb_004308_020 Hb_159327_010--Hb_004308_020 Hb_004785_050 Hb_004785_050 Hb_159327_010--Hb_004785_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0821292 0.363757 0.0252447 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0486325 0 0 0

CAGE analysis