Hb_013691_010

Information

Type -
Description -
Location Contig13691: 5207-6167
Sequence    

Annotation

kegg
ID pda:103724099
description uncharacterized LOC103724099
nr
ID XP_008813476.1
description PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID M1A4H3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005704 PE=4 SV=1
Gene Ontology
ID GO:0003743
description general transcription factor iie subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10238: 5104-21087
cDNA
(Sanger)
(ID:Location)		 030_D02.ab1: 5107-17662 , 045_H22.ab1: 5107-17621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013691_010 0.0 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
2 Hb_006663_090 0.1661619029 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
3 Hb_005679_070 0.1773102975 - - hypothetical protein M569_07741, partial [Genlisea aurea]
4 Hb_150023_010 0.1804568158 - - 50S ribosomal protein L2, putative [Ricinus communis]
5 Hb_001252_200 0.1838604158 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
6 Hb_002084_010 0.1845711591 - - hypothetical protein VITISV_017990 [Vitis vinifera]
7 Hb_005085_030 0.1859034867 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
8 Hb_000317_140 0.1894103276 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
9 Hb_002974_050 0.1905861745 - - -
10 Hb_004060_030 0.1923327365 - - PREDICTED: primase homolog protein [Jatropha curcas]
11 Hb_002027_180 0.1952789765 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
12 Hb_106415_010 0.1955073367 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
13 Hb_026228_010 0.1957182133 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008447_030 0.1967238612 - - -
15 Hb_000007_460 0.1968416545 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
16 Hb_001386_140 0.2002292541 - - PREDICTED: B2 protein [Jatropha curcas]
17 Hb_000825_030 0.2005915453 - - zinc binding dehydrogenase, putative [Ricinus communis]
18 Hb_000161_120 0.2040554502 - - unnamed protein product [Vitis vinifera]
19 Hb_012052_010 0.2050827608 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
20 Hb_000329_560 0.2063185653 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013691_010 Hb_013691_010 Hb_006663_090 Hb_006663_090 Hb_013691_010--Hb_006663_090 Hb_005679_070 Hb_005679_070 Hb_013691_010--Hb_005679_070 Hb_150023_010 Hb_150023_010 Hb_013691_010--Hb_150023_010 Hb_001252_200 Hb_001252_200 Hb_013691_010--Hb_001252_200 Hb_002084_010 Hb_002084_010 Hb_013691_010--Hb_002084_010 Hb_005085_030 Hb_005085_030 Hb_013691_010--Hb_005085_030 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_006663_090--Hb_005679_070 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_005527_020 Hb_005527_020 Hb_150023_010--Hb_005527_020 Hb_004117_160 Hb_004117_160 Hb_150023_010--Hb_004117_160 Hb_000991_070 Hb_000991_070 Hb_150023_010--Hb_000991_070 Hb_000107_200 Hb_000107_200 Hb_150023_010--Hb_000107_200 Hb_002079_050 Hb_002079_050 Hb_150023_010--Hb_002079_050 Hb_150023_010--Hb_000825_030 Hb_001005_150 Hb_001005_150 Hb_001252_200--Hb_001005_150 Hb_106415_010 Hb_106415_010 Hb_001252_200--Hb_106415_010 Hb_007083_020 Hb_007083_020 Hb_001252_200--Hb_007083_020 Hb_051424_010 Hb_051424_010 Hb_001252_200--Hb_051424_010 Hb_000087_030 Hb_000087_030 Hb_001252_200--Hb_000087_030 Hb_003992_040 Hb_003992_040 Hb_002084_010--Hb_003992_040 Hb_128998_010 Hb_128998_010 Hb_002084_010--Hb_128998_010 Hb_002084_010--Hb_051424_010 Hb_002084_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_002084_010--Hb_010565_010 Hb_112047_010 Hb_112047_010 Hb_002084_010--Hb_112047_010 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84558 2.81633 0.577625 6.79895 1.2594 13.4568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68019 3.15943 0.383129 1.57451 3.75307

CAGE analysis