Hb_013691_030

Information

Type -
Description -
Location Contig13691: 26991-28390
Sequence    

Annotation

kegg
ID rcu:RCOM_0387250
description transcription initiation factor iie, alpha subunit, putative
nr
ID KDO64494.1
description hypothetical protein CISIN_1g020131mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FAR7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020131mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013691_030 0.0 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
2 Hb_000007_460 0.1465654419 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
3 Hb_010504_030 0.1477068806 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
4 Hb_003581_010 0.1493897887 - - hypothetical protein VITISV_004687 [Vitis vinifera]
5 Hb_007188_020 0.1590503188 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
6 Hb_128998_010 0.1625380957 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
7 Hb_116632_010 0.1705739403 - - unnamed protein product [Vitis vinifera]
8 Hb_000265_130 0.1728416425 - - -
9 Hb_000001_040 0.1809720291 - - unnamed protein product [Coffea canephora]
10 Hb_005542_090 0.1907285365 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
11 Hb_001427_060 0.1907754024 - - -
12 Hb_032225_020 0.1927437882 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
13 Hb_007484_040 0.1929839492 - - -
14 Hb_007083_020 0.1963287821 - - hypothetical protein F775_15403 [Aegilops tauschii]
15 Hb_106005_010 0.1969699469 - - EG5651 [Manihot esculenta]
16 Hb_169170_010 0.1997352423 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
17 Hb_152554_010 0.2006879401 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
18 Hb_112047_010 0.2006920451 - - -
19 Hb_000261_360 0.2021511063 - - unknown [Lotus japonicus]
20 Hb_032927_010 0.2046365893 - - -

Gene co-expression network

sample Hb_013691_030 Hb_013691_030 Hb_000007_460 Hb_000007_460 Hb_013691_030--Hb_000007_460 Hb_010504_030 Hb_010504_030 Hb_013691_030--Hb_010504_030 Hb_003581_010 Hb_003581_010 Hb_013691_030--Hb_003581_010 Hb_007188_020 Hb_007188_020 Hb_013691_030--Hb_007188_020 Hb_128998_010 Hb_128998_010 Hb_013691_030--Hb_128998_010 Hb_116632_010 Hb_116632_010 Hb_013691_030--Hb_116632_010 Hb_000007_460--Hb_010504_030 Hb_000007_460--Hb_128998_010 Hb_000007_460--Hb_007188_020 Hb_000007_460--Hb_003581_010 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_000265_130 Hb_003581_010--Hb_128998_010 Hb_003581_010--Hb_116632_010 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_116632_010--Hb_005085_030 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15352 0.429331 0.664619 1.62771 0.740311 5.80315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0952 1.43748 0.410953 0.666248 0

CAGE analysis