Hb_013691_050

Information

Type -
Description -
Location Contig13691: 41227-56651
Sequence    

Annotation

kegg
ID csv:101203464
description WD40 repeat-containing protein SMU1-like
nr
ID XP_012092955.1
description PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
swissprot
ID Q8W117
description Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana GN=SMU1 PE=1 SV=1
trembl
ID A0A067JJC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05849 PE=4 SV=1
Gene Ontology
ID GO:0044424
description suppressor of mec-8 and unc-52 protein homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013691_050 0.0 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
2 Hb_001085_210 0.1750740131 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
3 Hb_001001_110 0.2328314594 - - -
4 Hb_001096_020 0.2575356487 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
5 Hb_020437_020 0.2722116798 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
6 Hb_021854_020 0.2793410214 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
7 Hb_000032_460 0.2825623674 - - calcineurin B, putative [Ricinus communis]
8 Hb_003186_040 0.2842728146 - - PREDICTED: protein DENND6A [Jatropha curcas]
9 Hb_001304_120 0.2852430986 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
10 Hb_000039_200 0.289040906 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
11 Hb_185058_020 0.2951385492 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_139848_010 0.2993701857 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
13 Hb_004449_020 0.3019109681 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
14 Hb_181026_010 0.3028430101 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_007078_010 0.3033759652 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004586_160 0.3034213336 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
17 Hb_000783_030 0.3039919017 - - tfiif-alpha, putative [Ricinus communis]
18 Hb_000820_060 0.307148787 - - -
19 Hb_033312_080 0.3091327265 - - aldose-1-epimerase, putative [Ricinus communis]
20 Hb_099990_010 0.3141574168 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]

Gene co-expression network

sample Hb_013691_050 Hb_013691_050 Hb_001085_210 Hb_001085_210 Hb_013691_050--Hb_001085_210 Hb_001001_110 Hb_001001_110 Hb_013691_050--Hb_001001_110 Hb_001096_020 Hb_001096_020 Hb_013691_050--Hb_001096_020 Hb_020437_020 Hb_020437_020 Hb_013691_050--Hb_020437_020 Hb_021854_020 Hb_021854_020 Hb_013691_050--Hb_021854_020 Hb_000032_460 Hb_000032_460 Hb_013691_050--Hb_000032_460 Hb_185058_020 Hb_185058_020 Hb_001085_210--Hb_185058_020 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_001001_110--Hb_001085_210 Hb_188487_010 Hb_188487_010 Hb_001001_110--Hb_188487_010 Hb_001001_110--Hb_001096_020 Hb_001001_110--Hb_185058_020 Hb_012753_010 Hb_012753_010 Hb_001001_110--Hb_012753_010 Hb_008033_060 Hb_008033_060 Hb_001096_020--Hb_008033_060 Hb_014324_010 Hb_014324_010 Hb_001096_020--Hb_014324_010 Hb_001096_020--Hb_021854_020 Hb_001141_040 Hb_001141_040 Hb_001096_020--Hb_001141_040 Hb_000054_110 Hb_000054_110 Hb_001096_020--Hb_000054_110 Hb_005470_030 Hb_005470_030 Hb_020437_020--Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_020437_020--Hb_002284_220 Hb_005167_020 Hb_005167_020 Hb_020437_020--Hb_005167_020 Hb_139848_010 Hb_139848_010 Hb_020437_020--Hb_139848_010 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_001437_280 Hb_001437_280 Hb_020437_020--Hb_001437_280 Hb_021854_010 Hb_021854_010 Hb_021854_020--Hb_021854_010 Hb_113119_010 Hb_113119_010 Hb_021854_020--Hb_113119_010 Hb_001310_050 Hb_001310_050 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_021854_020--Hb_008033_060 Hb_003688_210 Hb_003688_210 Hb_000032_460--Hb_003688_210 Hb_004449_060 Hb_004449_060 Hb_000032_460--Hb_004449_060 Hb_010931_020 Hb_010931_020 Hb_000032_460--Hb_010931_020 Hb_002301_110 Hb_002301_110 Hb_000032_460--Hb_002301_110 Hb_003050_030 Hb_003050_030 Hb_000032_460--Hb_003050_030 Hb_005168_020 Hb_005168_020 Hb_000032_460--Hb_005168_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.253347 0.102612 0 0.0435372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0296666 0.33213 0.427361 0.492795

CAGE analysis