Hb_013726_020

Information

Type -
Description -
Location Contig13726: 33510-38219
Sequence    

Annotation

kegg
ID rcu:RCOM_1613800
description ara4-interacting protein, putative
nr
ID XP_002511798.1
description ara4-interacting protein, putative [Ricinus communis]
swissprot
ID Q4V3D3
description Plant UBX domain-containing protein 9 OS=Arabidopsis thaliana GN=PUX9 PE=1 SV=1
trembl
ID B9RDK9
description Ara4-interacting protein, putative OS=Ricinus communis GN=RCOM_1613800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10282: 33540-38277 , PASA_asmbl_10283: 35306-38070
cDNA
(Sanger)
(ID:Location)		 018_K15.ab1: 36280-38277 , 019_B10.ab1: 38172-38273

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_020 0.0 - - ara4-interacting protein, putative [Ricinus communis]
2 Hb_000656_040 0.090864653 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
3 Hb_002835_240 0.0921593419 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
4 Hb_000347_540 0.0951879328 - - protein binding protein, putative [Ricinus communis]
5 Hb_000815_320 0.0978150773 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
6 Hb_002998_060 0.098925921 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
7 Hb_002168_060 0.1003967626 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
8 Hb_001579_030 0.100480449 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
9 Hb_004907_080 0.1009165003 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004619_080 0.1009301091 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
11 Hb_003016_020 0.1012704606 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
12 Hb_001205_310 0.1017384994 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
13 Hb_005054_060 0.1021858297 - - PREDICTED: syntaxin-81 [Jatropha curcas]
14 Hb_000010_090 0.1022194446 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
15 Hb_000451_010 0.1029142069 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_003057_090 0.1030181998 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
17 Hb_004324_070 0.1036191017 - - protein phosphatase 2C [Hevea brasiliensis]
18 Hb_082821_010 0.1050575216 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
19 Hb_009694_010 0.1051351268 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000768_170 0.1056866689 - - hypothetical protein JCGZ_02624 [Jatropha curcas]

Gene co-expression network

sample Hb_013726_020 Hb_013726_020 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_002835_240 Hb_002835_240 Hb_013726_020--Hb_002835_240 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_000815_320 Hb_000815_320 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_002168_060 Hb_002168_060 Hb_013726_020--Hb_002168_060 Hb_000329_030 Hb_000329_030 Hb_000656_040--Hb_000329_030 Hb_002774_060 Hb_002774_060 Hb_000656_040--Hb_002774_060 Hb_032208_090 Hb_032208_090 Hb_000656_040--Hb_032208_090 Hb_000579_140 Hb_000579_140 Hb_000656_040--Hb_000579_140 Hb_000045_090 Hb_000045_090 Hb_000656_040--Hb_000045_090 Hb_000656_040--Hb_002998_060 Hb_000787_050 Hb_000787_050 Hb_002835_240--Hb_000787_050 Hb_003057_090 Hb_003057_090 Hb_002835_240--Hb_003057_090 Hb_000175_440 Hb_000175_440 Hb_002835_240--Hb_000175_440 Hb_012725_050 Hb_012725_050 Hb_002835_240--Hb_012725_050 Hb_008748_040 Hb_008748_040 Hb_002835_240--Hb_008748_040 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_001662_070 Hb_001662_070 Hb_000347_540--Hb_001662_070 Hb_000347_540--Hb_000815_320 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000046_320 Hb_000046_320 Hb_002998_060--Hb_000046_320 Hb_003177_030 Hb_003177_030 Hb_002998_060--Hb_003177_030 Hb_000050_200 Hb_000050_200 Hb_002998_060--Hb_000050_200 Hb_000019_030 Hb_000019_030 Hb_002998_060--Hb_000019_030 Hb_000096_010 Hb_000096_010 Hb_002998_060--Hb_000096_010 Hb_000465_090 Hb_000465_090 Hb_002168_060--Hb_000465_090 Hb_001012_010 Hb_001012_010 Hb_002168_060--Hb_001012_010 Hb_002168_060--Hb_003057_090 Hb_002168_060--Hb_005054_060 Hb_002477_300 Hb_002477_300 Hb_002168_060--Hb_002477_300 Hb_004619_080 Hb_004619_080 Hb_002168_060--Hb_004619_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4736 1.8879 11.0922 11.0929 10.543 12.4113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4202 12.4051 12.3792 5.24958 5.66502

CAGE analysis