Hb_013726_080

Information

Type -
Description -
Location Contig13726: 83908-90051
Sequence    

Annotation

kegg
ID rcu:RCOM_1614250
description Glycogen synthase kinase-3 beta, putative (EC:2.7.11.26)
nr
ID XP_002511803.1
description Glycogen synthase kinase-3 beta, putative [Ricinus communis]
swissprot
ID Q96287
description Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3
trembl
ID B9RDL4
description Glycogen synthase kinase-3 beta, putative OS=Ricinus communis GN=RCOM_1614250 PE=4 SV=1
Gene Ontology
ID GO:0005524
description shaggy-related protein kinase theta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10293: 84393-90016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_080 0.0 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
2 Hb_002539_110 0.0704555149 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
3 Hb_001486_170 0.0830608218 - - PREDICTED: syntaxin-132 [Jatropha curcas]
4 Hb_000915_080 0.085204768 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_005463_130 0.0866608475 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
6 Hb_002054_050 0.0868714882 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
7 Hb_003430_090 0.0883145767 - - ATP binding protein, putative [Ricinus communis]
8 Hb_005895_010 0.0912477756 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
9 Hb_000362_170 0.0928344501 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_012215_010 0.0929179847 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
11 Hb_003104_040 0.0936085588 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
12 Hb_002836_140 0.0936756063 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
13 Hb_002248_110 0.0937516384 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
14 Hb_058999_030 0.0952944069 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
15 Hb_001005_030 0.0957704534 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
16 Hb_171334_010 0.09618168 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
17 Hb_002805_060 0.0962990448 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
18 Hb_003687_210 0.1013347289 - - PREDICTED: malate dehydrogenase [Populus euphratica]
19 Hb_000208_260 0.1025147497 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
20 Hb_001269_230 0.102775411 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]

Gene co-expression network

sample Hb_013726_080 Hb_013726_080 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_001486_170 Hb_001486_170 Hb_013726_080--Hb_001486_170 Hb_000915_080 Hb_000915_080 Hb_013726_080--Hb_000915_080 Hb_005463_130 Hb_005463_130 Hb_013726_080--Hb_005463_130 Hb_002054_050 Hb_002054_050 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_001486_170--Hb_005463_130 Hb_002836_140 Hb_002836_140 Hb_001486_170--Hb_002836_140 Hb_001486_170--Hb_002054_050 Hb_001486_170--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001486_170--Hb_008556_030 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000915_080--Hb_002836_140 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_002783_170 Hb_002783_170 Hb_000915_080--Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_000915_080--Hb_000414_050 Hb_005463_130--Hb_002054_050 Hb_001501_080 Hb_001501_080 Hb_005463_130--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_002054_050--Hb_001501_080 Hb_002750_050 Hb_002750_050 Hb_003430_090--Hb_002750_050 Hb_000392_370 Hb_000392_370 Hb_003430_090--Hb_000392_370 Hb_000207_190 Hb_000207_190 Hb_003430_090--Hb_000207_190 Hb_041290_010 Hb_041290_010 Hb_003430_090--Hb_041290_010 Hb_003430_090--Hb_000915_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0453 15.0544 41.6182 32.3642 37.5814 36.0636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.927 9.87844 16.3268 14.758 27.1818

CAGE analysis