Hb_013726_090

Information

Type -
Description -
Location Contig13726: 91603-94612
Sequence    

Annotation

kegg
ID rcu:RCOM_1614270
description cleavage and polyadenylation specificity factor, putative
nr
ID XP_012083465.1
description PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RDL6
description Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_1614270 PE=4 SV=1
Gene Ontology
ID GO:0005774
description e3 ubiquitin-protein ligase at1g63170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10295: 91448-94574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
2 Hb_000011_060 0.054067303 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
3 Hb_002600_150 0.0607466017 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
4 Hb_000138_100 0.0608601884 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
5 Hb_003883_060 0.0613788095 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
6 Hb_001999_310 0.0617354133 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
7 Hb_012498_010 0.0649871866 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
8 Hb_000140_290 0.0671378567 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
9 Hb_011674_020 0.068812174 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
10 Hb_004846_220 0.0711855472 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
11 Hb_000053_040 0.0720558955 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
12 Hb_010142_020 0.0725385855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001876_010 0.0727515929 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
14 Hb_005357_160 0.0728058707 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
15 Hb_001105_020 0.0729082582 - - expressed protein, putative [Ricinus communis]
16 Hb_003581_200 0.0730744944 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
17 Hb_002169_050 0.0741415005 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
18 Hb_002968_080 0.0743436451 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
19 Hb_004679_030 0.0745419115 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
20 Hb_000656_010 0.0746473981 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_013726_090 Hb_013726_090 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_002600_150--Hb_000138_100 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3773 9.17388 11.154 15.4009 8.22941 14.2208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6446 9.08464 12.2726 17.7019 16.6947

CAGE analysis