Hb_013753_010

Information

Type -
Description -
Location Contig13753: 5833-10306
Sequence    

Annotation

kegg
ID tcc:TCM_039865
description Evolutionarily conserved C-terminal region 2 isoform 1
nr
ID XP_012089585.1
description PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
swissprot
ID Q4R5D9
description YTH domain-containing family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1
trembl
ID A0A067JU04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10340: 5715-10454 , PASA_asmbl_10341: 5902-10456 , PASA_asmbl_10342: 5728-10439 , PASA_asmbl_10343: 5902-10454 , PASA_asmbl_10345: 7984-8526
cDNA
(Sanger)
(ID:Location)		 017_P24.ab1: 8882-10456 , 028_G15.ab1: 8774-10456 , 033_E13.ab1: 8835-10456 , 038_D24.ab1: 8777-10454 , 041_G24.ab1: 9002-10455 , 043_C22.ab1: 8799-10456

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013753_010 0.0 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
2 Hb_000890_220 0.0712334854 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
3 Hb_004032_350 0.0725757424 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
4 Hb_012760_200 0.0730800867 - - protein phsophatase-2a, putative [Ricinus communis]
5 Hb_101151_020 0.0840758175 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000331_480 0.0851841386 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
7 Hb_025048_040 0.0881322444 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
8 Hb_000076_290 0.0902421697 - - translation factor sui1, putative [Ricinus communis]
9 Hb_000779_040 0.0905492523 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
10 Hb_000212_280 0.0914500541 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
11 Hb_001034_020 0.0925175556 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
12 Hb_002374_150 0.0943715807 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
13 Hb_002078_420 0.0949194223 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
14 Hb_009421_030 0.0957990836 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
15 Hb_006275_050 0.0964313902 - - CP3 [Hevea brasiliensis]
16 Hb_000365_060 0.0969896455 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_001486_120 0.1006312027 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_000016_280 0.1007344309 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
19 Hb_007348_030 0.100921002 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
20 Hb_001582_030 0.1014214442 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]

Gene co-expression network

sample Hb_013753_010 Hb_013753_010 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_012760_200 Hb_012760_200 Hb_013753_010--Hb_012760_200 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_000779_040 Hb_000779_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_101151_020--Hb_012760_200 Hb_000331_480--Hb_001034_020 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000331_480--Hb_000212_280 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_025048_040--Hb_000212_280 Hb_000270_450 Hb_000270_450 Hb_025048_040--Hb_000270_450 Hb_025048_040--Hb_012760_200 Hb_025048_040--Hb_005028_010 Hb_001009_050 Hb_001009_050 Hb_025048_040--Hb_001009_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2163.17 1145.58 119.331 186.481 2221.77 2575.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
587.73 336.077 514.216 529.562 189.571

CAGE analysis