Hb_013766_010

Information

Type -
Description -
Location Contig13766: 33635-34324
Sequence    

Annotation

kegg
ID pop:POPTR_0016s01940g
description POPTRDRAFT_575987; VQ motif-containing family protein
nr
ID KDP42784.1
description hypothetical protein JCGZ_00483 [Jatropha curcas]
swissprot
ID Q9LIE6
description VQ motif-containing protein 22 OS=Arabidopsis thaliana GN=VQ22 PE=2 SV=1
trembl
ID A0A067LFD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10356: 34039-34403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013766_010 0.0 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
2 Hb_002486_010 0.2048570729 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
3 Hb_007747_180 0.2071827794 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
4 Hb_001565_110 0.2125627302 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
5 Hb_001079_020 0.222746034 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
6 Hb_002253_060 0.22293982 - - conserved hypothetical protein [Ricinus communis]
7 Hb_082182_010 0.2231221021 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_004291_010 0.2236087273 - - (R)-limonene synthase, putative [Ricinus communis]
9 Hb_002805_020 0.2253587809 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
10 Hb_003106_120 0.2276758791 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
11 Hb_000260_290 0.2345069522 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
12 Hb_003052_220 0.2385462684 - - -
13 Hb_007747_140 0.2463032149 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
14 Hb_003754_080 0.2471822336 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
15 Hb_000297_020 0.2599139372 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
16 Hb_004208_130 0.2610585772 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
17 Hb_024468_020 0.2612118263 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_002151_050 0.2678080726 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001619_080 0.2733156713 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003913_080 0.2777677575 - - rpl27A [Hemiselmis andersenii]

Gene co-expression network

sample Hb_013766_010 Hb_013766_010 Hb_002486_010 Hb_002486_010 Hb_013766_010--Hb_002486_010 Hb_007747_180 Hb_007747_180 Hb_013766_010--Hb_007747_180 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_002253_060 Hb_002253_060 Hb_013766_010--Hb_002253_060 Hb_082182_010 Hb_082182_010 Hb_013766_010--Hb_082182_010 Hb_002805_020 Hb_002805_020 Hb_002486_010--Hb_002805_020 Hb_002486_010--Hb_007747_180 Hb_002486_010--Hb_082182_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_007747_180--Hb_082182_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_007747_180--Hb_002805_020 Hb_000297_020 Hb_000297_020 Hb_007747_180--Hb_000297_020 Hb_000260_290 Hb_000260_290 Hb_001565_110--Hb_000260_290 Hb_000025_430 Hb_000025_430 Hb_001565_110--Hb_000025_430 Hb_001565_110--Hb_082182_010 Hb_005439_040 Hb_005439_040 Hb_001565_110--Hb_005439_040 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_001079_020--Hb_002805_020 Hb_001079_020--Hb_002253_060 Hb_001079_020--Hb_002486_010 Hb_006420_090 Hb_006420_090 Hb_001079_020--Hb_006420_090 Hb_105328_030 Hb_105328_030 Hb_001079_020--Hb_105328_030 Hb_001720_060 Hb_001720_060 Hb_002253_060--Hb_001720_060 Hb_004291_010 Hb_004291_010 Hb_002253_060--Hb_004291_010 Hb_003106_120 Hb_003106_120 Hb_002253_060--Hb_003106_120 Hb_000836_490 Hb_000836_490 Hb_002253_060--Hb_000836_490 Hb_082182_010--Hb_005439_040 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33655 27.6789 0.999919 2.11458 0.273043 1.77231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4998 43.0878 60.8038 58.6511 0.128109

CAGE analysis