Hb_013818_030

Information

Type -
Description -
Location Contig13818: 9222-13677
Sequence    

Annotation

kegg
ID rcu:RCOM_0137940
description hypothetical protein
nr
ID XP_002526152.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P87055
description Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A10.07 PE=4 SV=1
trembl
ID B9SJI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0137940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10510: 14440-15666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013818_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032920_130 0.0948793949 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
3 Hb_132840_100 0.0989131544 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
4 Hb_010417_060 0.1011858574 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
5 Hb_003097_080 0.1039668301 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
6 Hb_001301_090 0.1048339745 - - conserved hypothetical protein [Ricinus communis]
7 Hb_158604_010 0.1074480749 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
8 Hb_000661_020 0.1098928764 - - BnaC08g27190D [Brassica napus]
9 Hb_000375_130 0.1135334159 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
10 Hb_001638_300 0.1139468842 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
11 Hb_007380_140 0.114563107 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
12 Hb_004629_010 0.1178889371 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
13 Hb_002896_060 0.1182991427 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_003040_020 0.1190908442 - - PREDICTED: protein cereblon [Jatropha curcas]
15 Hb_000483_380 0.1190986053 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
16 Hb_002066_080 0.1194947544 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
17 Hb_001051_090 0.1198379562 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_003894_040 0.1202960407 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000735_100 0.1208609547 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
20 Hb_000599_170 0.1212651081 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_013818_030 Hb_013818_030 Hb_032920_130 Hb_032920_130 Hb_013818_030--Hb_032920_130 Hb_132840_100 Hb_132840_100 Hb_013818_030--Hb_132840_100 Hb_010417_060 Hb_010417_060 Hb_013818_030--Hb_010417_060 Hb_003097_080 Hb_003097_080 Hb_013818_030--Hb_003097_080 Hb_001301_090 Hb_001301_090 Hb_013818_030--Hb_001301_090 Hb_158604_010 Hb_158604_010 Hb_013818_030--Hb_158604_010 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_001638_300 Hb_001638_300 Hb_132840_100--Hb_001638_300 Hb_132840_100--Hb_032920_130 Hb_132840_100--Hb_000035_410 Hb_132840_100--Hb_002044_170 Hb_000176_130 Hb_000176_130 Hb_132840_100--Hb_000176_130 Hb_000365_330 Hb_000365_330 Hb_132840_100--Hb_000365_330 Hb_000062_470 Hb_000062_470 Hb_010417_060--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_010417_060--Hb_000176_130 Hb_000453_140 Hb_000453_140 Hb_003097_080--Hb_000453_140 Hb_027380_030 Hb_027380_030 Hb_003097_080--Hb_027380_030 Hb_000076_260 Hb_000076_260 Hb_003097_080--Hb_000076_260 Hb_001504_040 Hb_001504_040 Hb_003097_080--Hb_001504_040 Hb_001307_080 Hb_001307_080 Hb_003097_080--Hb_001307_080 Hb_067193_010 Hb_067193_010 Hb_001301_090--Hb_067193_010 Hb_001301_090--Hb_002044_170 Hb_001301_090--Hb_010417_060 Hb_005731_090 Hb_005731_090 Hb_001301_090--Hb_005731_090 Hb_001301_090--Hb_032920_130 Hb_004453_110 Hb_004453_110 Hb_001301_090--Hb_004453_110 Hb_158604_010--Hb_032920_130 Hb_105641_010 Hb_105641_010 Hb_158604_010--Hb_105641_010 Hb_000115_160 Hb_000115_160 Hb_158604_010--Hb_000115_160 Hb_000483_380 Hb_000483_380 Hb_158604_010--Hb_000483_380 Hb_008112_030 Hb_008112_030 Hb_158604_010--Hb_008112_030 Hb_007380_140 Hb_007380_140 Hb_158604_010--Hb_007380_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.1918 10.5263 7.74886 7.9181 16.1732 9.10228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62264 1.5124 4.45808 5.58447 4.7188

CAGE analysis