Hb_013818_060

Information

Type -
Description -
Location Contig13818: 32095-35561
Sequence    

Annotation

kegg
ID rcu:RCOM_0137690
description Brassinosteroid LRR receptor kinase precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_002526147.1
description Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
swissprot
ID C0LGV1
description LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1
trembl
ID B9SJH8
description Brassinosteroid LRR receptor kinase, putative OS=Ricinus communis GN=RCOM_0137690 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lrr receptor-like serine threonine-protein kinase rch1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10516: 32135-35339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013818_060 0.0 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
2 Hb_000120_120 0.1132347335 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
3 Hb_000249_130 0.1349888601 - - hypothetical protein RCOM_0254640 [Ricinus communis]
4 Hb_000249_090 0.1409511448 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
5 Hb_027892_010 0.1411534785 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
6 Hb_000120_650 0.1429778922 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
7 Hb_143629_090 0.1491972802 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
8 Hb_004871_050 0.1555121829 - - hypothetical protein F383_22684 [Gossypium arboreum]
9 Hb_152439_020 0.1736709447 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
10 Hb_011360_080 0.1794450197 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_002739_110 0.1798189522 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
12 Hb_004800_160 0.1815859662 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
13 Hb_001437_240 0.1818460225 - - -
14 Hb_001268_400 0.182205209 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
15 Hb_004460_010 0.1856070768 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
16 Hb_017124_020 0.1892130695 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
17 Hb_002685_090 0.1895435632 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
18 Hb_000972_010 0.1898005586 - - PREDICTED: kinesin KP1 [Jatropha curcas]
19 Hb_001004_040 0.1913105929 - - conserved hypothetical protein [Ricinus communis]
20 Hb_024952_010 0.1920690226 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_013818_060 Hb_013818_060 Hb_000120_120 Hb_000120_120 Hb_013818_060--Hb_000120_120 Hb_000249_130 Hb_000249_130 Hb_013818_060--Hb_000249_130 Hb_000249_090 Hb_000249_090 Hb_013818_060--Hb_000249_090 Hb_027892_010 Hb_027892_010 Hb_013818_060--Hb_027892_010 Hb_000120_650 Hb_000120_650 Hb_013818_060--Hb_000120_650 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_000120_120--Hb_027892_010 Hb_000120_120--Hb_000249_130 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000120_120--Hb_000249_090 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000380_180 Hb_000380_180 Hb_000249_130--Hb_000380_180 Hb_000249_090--Hb_027892_010 Hb_000249_090--Hb_000120_650 Hb_004705_030 Hb_004705_030 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_002685_090 Hb_002685_090 Hb_000249_090--Hb_002685_090 Hb_027892_010--Hb_000120_650 Hb_027892_010--Hb_004705_030 Hb_027892_010--Hb_000249_130 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_000120_650--Hb_002685_090 Hb_000120_650--Hb_004871_050 Hb_004800_160 Hb_004800_160 Hb_143629_090--Hb_004800_160 Hb_152439_020 Hb_152439_020 Hb_143629_090--Hb_152439_020 Hb_001437_240 Hb_001437_240 Hb_143629_090--Hb_001437_240 Hb_143629_090--Hb_024952_010 Hb_003943_030 Hb_003943_030 Hb_143629_090--Hb_003943_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.864 5.42993 5.01653 5.84859 63.0762 48.9145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.255 88.7136 382.576 13.4458 13.8193

CAGE analysis