Hb_013839_010

Information

Type -
Description -
Location Contig13839: 1176-3902
Sequence    

Annotation

kegg
ID rcu:RCOM_0964760
description Angio-associated migratory cell protein, putative (EC:2.7.11.7)
nr
ID XP_002517787.1
description Angio-associated migratory cell protein, putative [Ricinus communis]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID B9RVL8
description Angio-associated migratory cell protein, putative OS=Ricinus communis GN=RCOM_0964760 PE=4 SV=1
Gene Ontology
ID GO:0005634
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013839_010 0.0 - - Angio-associated migratory cell protein, putative [Ricinus communis]
2 Hb_000451_060 0.1271825667 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
3 Hb_153544_010 0.1348667333 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
4 Hb_000191_030 0.140835544 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
5 Hb_008699_020 0.1432149491 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
6 Hb_116608_010 0.1458968124 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
7 Hb_001277_320 0.1478115869 - - Stem-specific protein TSJT1, putative [Ricinus communis]
8 Hb_000987_120 0.1486729444 - - PREDICTED: protein SIEL [Jatropha curcas]
9 Hb_174865_030 0.1489221547 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
10 Hb_004871_020 0.1505115143 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
11 Hb_000111_340 0.1514345568 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
12 Hb_001269_270 0.1521737784 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_001832_120 0.1545022877 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
14 Hb_003683_040 0.1557438271 - - unnamed protein product [Coffea canephora]
15 Hb_004109_020 0.1561801799 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
16 Hb_000506_120 0.1568967747 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
17 Hb_000096_130 0.1572504333 - - hypothetical protein 23 [Hevea brasiliensis]
18 Hb_126861_010 0.1575565277 - - hypothetical protein M569_05914, partial [Genlisea aurea]
19 Hb_007317_150 0.1575984052 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
20 Hb_032260_030 0.157882792 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]

Gene co-expression network

sample Hb_013839_010 Hb_013839_010 Hb_000451_060 Hb_000451_060 Hb_013839_010--Hb_000451_060 Hb_153544_010 Hb_153544_010 Hb_013839_010--Hb_153544_010 Hb_000191_030 Hb_000191_030 Hb_013839_010--Hb_000191_030 Hb_008699_020 Hb_008699_020 Hb_013839_010--Hb_008699_020 Hb_116608_010 Hb_116608_010 Hb_013839_010--Hb_116608_010 Hb_001277_320 Hb_001277_320 Hb_013839_010--Hb_001277_320 Hb_000451_060--Hb_000191_030 Hb_004871_020 Hb_004871_020 Hb_000451_060--Hb_004871_020 Hb_004052_020 Hb_004052_020 Hb_000451_060--Hb_004052_020 Hb_000451_060--Hb_153544_010 Hb_000317_070 Hb_000317_070 Hb_000451_060--Hb_000317_070 Hb_001221_310 Hb_001221_310 Hb_000451_060--Hb_001221_310 Hb_153544_010--Hb_004871_020 Hb_000030_290 Hb_000030_290 Hb_153544_010--Hb_000030_290 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_000191_030--Hb_004871_020 Hb_000191_030--Hb_153544_010 Hb_019516_100 Hb_019516_100 Hb_000191_030--Hb_019516_100 Hb_000191_030--Hb_000317_070 Hb_000111_340 Hb_000111_340 Hb_000191_030--Hb_000111_340 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_004052_050 Hb_004052_050 Hb_116608_010--Hb_004052_050 Hb_000696_290 Hb_000696_290 Hb_116608_010--Hb_000696_290 Hb_116608_010--Hb_153544_010 Hb_000172_640 Hb_000172_640 Hb_116608_010--Hb_000172_640 Hb_000331_470 Hb_000331_470 Hb_116608_010--Hb_000331_470 Hb_011671_100 Hb_011671_100 Hb_116608_010--Hb_011671_100 Hb_000010_460 Hb_000010_460 Hb_001277_320--Hb_000010_460 Hb_008771_030 Hb_008771_030 Hb_001277_320--Hb_008771_030 Hb_001722_100 Hb_001722_100 Hb_001277_320--Hb_001722_100 Hb_002061_040 Hb_002061_040 Hb_001277_320--Hb_002061_040 Hb_003787_010 Hb_003787_010 Hb_001277_320--Hb_003787_010 Hb_002216_040 Hb_002216_040 Hb_001277_320--Hb_002216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89135 4.15666 1.69715 4.90443 4.20364 2.15102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9043 17.3748 3.94297 6.1346 0.580629

CAGE analysis