Hb_013893_010

Information

Type -
Description -
Location Contig13893: 2840-3267
Sequence    

Annotation

kegg
ID rcu:RCOM_0759970
description beta-fructofuranosidase, putative
nr
ID AGU19630.1
description neutral/alkaline invertase 3 [Hevea brasiliensis]
swissprot
ID Q9FK88
description Alkaline/neutral invertase E, chloroplastic OS=Arabidopsis thaliana GN=INVE PE=1 SV=1
trembl
ID W5REH2
description Neutral/alkaline invertase 3 OS=Hevea brasiliensis GN=NIN3 PE=2 SV=1
Gene Ontology
ID GO:0033926
description alkaline neutral invertase cinv1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013893_010 0.0 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
2 Hb_083380_010 0.1320361496 - - -
3 Hb_003117_010 0.1350636446 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
4 Hb_027751_060 0.1564778292 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
5 Hb_000056_250 0.1669740276 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
6 Hb_092107_010 0.1678802691 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023344_050 0.1707185694 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
8 Hb_005496_090 0.1750932504 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
9 Hb_005167_030 0.17548598 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
10 Hb_007943_190 0.17593302 - - cytoplasmic dynein light chain, putative [Ricinus communis]
11 Hb_130719_010 0.1798714744 - - V-type proton ATPase subunit E [Hevea brasiliensis]
12 Hb_000320_330 0.182327075 - - uncharacterized protein LOC100527884 [Glycine max]
13 Hb_000016_170 0.1824471341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001172_100 0.1859085464 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
15 Hb_001157_080 0.1863504633 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003294_100 0.1868353167 - - hypothetical protein VITISV_009629 [Vitis vinifera]
17 Hb_002078_440 0.1885067896 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
18 Hb_005278_040 0.1895780205 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
19 Hb_002239_060 0.1915959475 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
20 Hb_025645_030 0.1935764027 - - -

Gene co-expression network

sample Hb_013893_010 Hb_013893_010 Hb_083380_010 Hb_083380_010 Hb_013893_010--Hb_083380_010 Hb_003117_010 Hb_003117_010 Hb_013893_010--Hb_003117_010 Hb_027751_060 Hb_027751_060 Hb_013893_010--Hb_027751_060 Hb_000056_250 Hb_000056_250 Hb_013893_010--Hb_000056_250 Hb_092107_010 Hb_092107_010 Hb_013893_010--Hb_092107_010 Hb_023344_050 Hb_023344_050 Hb_013893_010--Hb_023344_050 Hb_005496_090 Hb_005496_090 Hb_083380_010--Hb_005496_090 Hb_138585_040 Hb_138585_040 Hb_083380_010--Hb_138585_040 Hb_001157_080 Hb_001157_080 Hb_083380_010--Hb_001157_080 Hb_001172_100 Hb_001172_100 Hb_083380_010--Hb_001172_100 Hb_005278_040 Hb_005278_040 Hb_083380_010--Hb_005278_040 Hb_130719_010 Hb_130719_010 Hb_083380_010--Hb_130719_010 Hb_003117_010--Hb_027751_060 Hb_003294_100 Hb_003294_100 Hb_003117_010--Hb_003294_100 Hb_003117_010--Hb_092107_010 Hb_001294_010 Hb_001294_010 Hb_003117_010--Hb_001294_010 Hb_002078_480 Hb_002078_480 Hb_003117_010--Hb_002078_480 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_000056_250--Hb_000096_150 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_000056_250--Hb_005278_040 Hb_000056_250--Hb_000417_260 Hb_000056_250--Hb_130719_010 Hb_001014_230 Hb_001014_230 Hb_092107_010--Hb_001014_230 Hb_092107_010--Hb_001294_010 Hb_004056_030 Hb_004056_030 Hb_092107_010--Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_023344_050--Hb_000056_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08952 1.62016 3.10271 16.3984 2.69636 11.0865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4339 48.4287 48.2049 13.442 20.938

CAGE analysis