Hb_014034_020

Information

Type -
Description -
Location Contig14034: 9404-10348
Sequence    

Annotation

kegg
ID pop:POPTR_0075s00200g
description hypothetical protein
nr
ID XP_006388915.1
description hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
swissprot
ID Q9C9L5
description Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1
trembl
ID U7E044
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0075s00200g PE=4 SV=1
Gene Ontology
ID GO:0004672
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014034_020 0.0 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
2 Hb_004254_070 0.0194215508 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
3 Hb_003188_020 0.0272862294 - - chitinase, putative [Ricinus communis]
4 Hb_000500_190 0.0301260358 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
5 Hb_000446_100 0.0369199378 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_001301_020 0.0411540076 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
7 Hb_000025_250 0.0429460317 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
8 Hb_000563_080 0.045816667 - - -
9 Hb_153208_010 0.0460352105 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
10 Hb_020141_020 0.0478552156 - - -
11 Hb_000229_080 0.0493076893 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_002944_020 0.0561906144 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
13 Hb_001456_040 0.0594377112 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
14 Hb_010358_010 0.0612679457 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_005464_040 0.065984911 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000563_060 0.0689062813 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
17 Hb_018709_010 0.0698693927 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_002553_170 0.0699151268 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
19 Hb_002835_020 0.0723252673 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
20 Hb_106528_020 0.072606467 - - Cationic peroxidase 2 precursor [Theobroma cacao]

Gene co-expression network

sample Hb_014034_020 Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_014034_020--Hb_004254_070 Hb_003188_020 Hb_003188_020 Hb_014034_020--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_014034_020--Hb_000500_190 Hb_000446_100 Hb_000446_100 Hb_014034_020--Hb_000446_100 Hb_001301_020 Hb_001301_020 Hb_014034_020--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_014034_020--Hb_000025_250 Hb_004254_070--Hb_000446_100 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_001301_020 Hb_004254_070--Hb_000025_250 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_000500_190--Hb_003188_020 Hb_000500_190--Hb_000446_100 Hb_000500_190--Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_001301_020--Hb_000563_080 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_018709_010 Hb_018709_010 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_000025_250--Hb_005464_040 Hb_000025_250--Hb_000563_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.218206 0.0711716 0.0415534 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.85777 0

CAGE analysis