Hb_014037_010

Information

Type -
Description -
Location Contig14037: 10189-11205
Sequence    

Annotation

kegg
ID tcc:TCM_016855
description hypothetical protein
nr
ID XP_012081910.1
description PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EBN7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_016855 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014037_010 0.0 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
2 Hb_005237_040 0.0611031759 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_009785_010 0.0758483555 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
4 Hb_004884_200 0.0831200568 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
5 Hb_000236_050 0.0947641032 - - phosphate transporter [Manihot esculenta]
6 Hb_002391_350 0.1067946587 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
7 Hb_005211_090 0.1087611519 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
8 Hb_009627_040 0.1116671061 - - Lipase class 3-related protein, putative [Theobroma cacao]
9 Hb_001504_220 0.1204563999 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_006711_020 0.1216059789 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
11 Hb_000010_200 0.1239962517 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_000029_370 0.1258843617 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_182021_010 0.1261985775 - - sucrose transporter 4 [Hevea brasiliensis]
14 Hb_004881_060 0.1273131535 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
15 Hb_007894_260 0.1308919298 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_000034_030 0.1337118336 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_002686_390 0.1346491007 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
18 Hb_000011_120 0.1348981683 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
19 Hb_008692_010 0.1368702873 - - putative polyol transported protein 2 [Hevea brasiliensis]
20 Hb_056101_010 0.1379901605 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_014037_010 Hb_014037_010 Hb_005237_040 Hb_005237_040 Hb_014037_010--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_014037_010--Hb_009785_010 Hb_004884_200 Hb_004884_200 Hb_014037_010--Hb_004884_200 Hb_000236_050 Hb_000236_050 Hb_014037_010--Hb_000236_050 Hb_002391_350 Hb_002391_350 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_004884_200 Hb_005237_040--Hb_000236_050 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_005237_040--Hb_002391_350 Hb_009785_010--Hb_004884_200 Hb_009785_010--Hb_006711_020 Hb_009785_010--Hb_000236_050 Hb_009785_010--Hb_002391_350 Hb_004884_200--Hb_002391_350 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_000236_050--Hb_004884_200 Hb_000236_050--Hb_005211_090 Hb_000236_050--Hb_002391_350 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_009627_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_002391_350--Hb_006711_020 Hb_005211_090--Hb_009627_040 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_000011_120 Hb_000011_120 Hb_005211_090--Hb_000011_120 Hb_005211_090--Hb_002391_350 Hb_005211_090--Hb_005237_040 Hb_001329_110 Hb_001329_110 Hb_005211_090--Hb_001329_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.89299 1.13593 2.23565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198502 0.117093 0.0719205 10.3082 1.83869

CAGE analysis