Hb_014056_020

Information

Type -
Description -
Location Contig14056: 17189-30289
Sequence    

Annotation

kegg
ID rcu:RCOM_0511220
description zinc finger protein, putative
nr
ID XP_002528959.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SJB4
description GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1
trembl
ID B9SSJ0
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0511220 PE=4 SV=1
Gene Ontology
ID GO:0005576
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10993: 29257-31652 , PASA_asmbl_10994: 30278-30383
cDNA
(Sanger)
(ID:Location)		 006_P21.ab1: 29257-30117 , 014_G16.ab1: 29265-30169 , 016_O18.ab1: 29256-30016 , 026_B15.ab1: 29263-29995 , 046_J20.ab1: 29256-30170 , 047_G10.ab1: 29265-30080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014056_020 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002965_170 0.0270721894 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
3 Hb_002743_010 0.0307285778 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006117_030 0.0326076743 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000915_210 0.0335757199 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001519_140 0.035438849 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
7 Hb_001205_220 0.0416089166 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000512_120 0.0440211828 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
9 Hb_007187_010 0.0468828697 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
10 Hb_011382_010 0.0470088372 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
11 Hb_000557_070 0.0487440843 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
12 Hb_000333_010 0.0494523598 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
13 Hb_000731_150 0.0497109732 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
14 Hb_005280_020 0.0513675784 - - glycine cleavage system h protein, putative [Ricinus communis]
15 Hb_074312_010 0.0534180256 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
16 Hb_000010_160 0.0550146423 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
17 Hb_000834_160 0.0565673154 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
18 Hb_001205_140 0.0566459265 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
19 Hb_005610_070 0.0567345824 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_001135_310 0.0568948833 - - Chlorophyll a-b binding protein 6A [Morus notabilis]

Gene co-expression network

sample Hb_014056_020 Hb_014056_020 Hb_002965_170 Hb_002965_170 Hb_014056_020--Hb_002965_170 Hb_002743_010 Hb_002743_010 Hb_014056_020--Hb_002743_010 Hb_006117_030 Hb_006117_030 Hb_014056_020--Hb_006117_030 Hb_000915_210 Hb_000915_210 Hb_014056_020--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_014056_020--Hb_001519_140 Hb_001205_220 Hb_001205_220 Hb_014056_020--Hb_001205_220 Hb_002965_170--Hb_001519_140 Hb_002965_170--Hb_006117_030 Hb_002965_170--Hb_001205_220 Hb_000834_160 Hb_000834_160 Hb_002965_170--Hb_000834_160 Hb_002965_170--Hb_000915_210 Hb_002743_010--Hb_000915_210 Hb_001571_100 Hb_001571_100 Hb_002743_010--Hb_001571_100 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120 Hb_000731_150 Hb_000731_150 Hb_002743_010--Hb_000731_150 Hb_001205_140 Hb_001205_140 Hb_006117_030--Hb_001205_140 Hb_000557_070 Hb_000557_070 Hb_006117_030--Hb_000557_070 Hb_006117_030--Hb_000915_210 Hb_004724_090 Hb_004724_090 Hb_006117_030--Hb_004724_090 Hb_000915_210--Hb_000731_150 Hb_000915_210--Hb_001571_100 Hb_001519_140--Hb_001205_220 Hb_004993_020 Hb_004993_020 Hb_001519_140--Hb_004993_020 Hb_000010_160 Hb_000010_160 Hb_001519_140--Hb_000010_160 Hb_001519_140--Hb_006117_030 Hb_011382_010 Hb_011382_010 Hb_001205_220--Hb_011382_010 Hb_001205_220--Hb_000010_160 Hb_007187_010 Hb_007187_010 Hb_001205_220--Hb_007187_010 Hb_001205_220--Hb_000731_150 Hb_074312_010 Hb_074312_010 Hb_001205_220--Hb_074312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.0016 261.481 103.958 0 0.0122726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.25724 275.691

CAGE analysis