Hb_014068_010

Information

Type -
Description -
Location Contig14068: 2839-12522
Sequence    

Annotation

kegg
ID rcu:RCOM_1440580
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_012064925.1
description PREDICTED: phototropin-1 [Jatropha curcas]
swissprot
ID O48963
description Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1
trembl
ID A0A067LAA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05615 PE=4 SV=1
Gene Ontology
ID GO:0005773
description phototropin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11013: 3515-12622 , PASA_asmbl_11014: 9209-9868 , PASA_asmbl_11015: 8072-10017
cDNA
(Sanger)
(ID:Location)		 036_D15.ab1: 8072-10017

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014068_010 0.0 - - PREDICTED: phototropin-1 [Jatropha curcas]
2 Hb_003020_070 0.1069950929 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
3 Hb_002890_160 0.1309713479 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
4 Hb_003531_050 0.1313122995 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
5 Hb_000645_260 0.1314037656 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
6 Hb_000243_290 0.1346923601 - - plastidic aldolase family protein [Populus trichocarpa]
7 Hb_001352_030 0.1378514045 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
8 Hb_002030_020 0.1391821857 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
9 Hb_000982_100 0.1432251205 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
10 Hb_000345_400 0.1437649751 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000265_170 0.1440756245 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
12 Hb_005050_050 0.1512247292 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
13 Hb_001638_190 0.1525736803 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_000538_250 0.1545351536 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
15 Hb_000890_170 0.1552276845 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
16 Hb_001655_080 0.1568827507 - - Purple acid phosphatase precursor, putative [Ricinus communis]
17 Hb_000926_040 0.1581363075 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
18 Hb_010534_040 0.1601879189 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
19 Hb_000836_090 0.1609416669 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
20 Hb_000638_220 0.1615427375 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_014068_010 Hb_014068_010 Hb_003020_070 Hb_003020_070 Hb_014068_010--Hb_003020_070 Hb_002890_160 Hb_002890_160 Hb_014068_010--Hb_002890_160 Hb_003531_050 Hb_003531_050 Hb_014068_010--Hb_003531_050 Hb_000645_260 Hb_000645_260 Hb_014068_010--Hb_000645_260 Hb_000243_290 Hb_000243_290 Hb_014068_010--Hb_000243_290 Hb_001352_030 Hb_001352_030 Hb_014068_010--Hb_001352_030 Hb_003020_070--Hb_002890_160 Hb_000212_270 Hb_000212_270 Hb_003020_070--Hb_000212_270 Hb_003020_070--Hb_003531_050 Hb_003020_070--Hb_001352_030 Hb_001898_100 Hb_001898_100 Hb_003020_070--Hb_001898_100 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_003531_050--Hb_001352_030 Hb_001606_010 Hb_001606_010 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_000265_170 Hb_000265_170 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000645_260--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_059318_010 Hb_059318_010 Hb_000243_290--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_000243_290--Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_000243_290--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_000243_290--Hb_032731_010 Hb_002030_020 Hb_002030_020 Hb_000243_290--Hb_002030_020 Hb_000243_290--Hb_001352_030 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.778268 5.79812 21.4193 6.95216 0.0178713 0.0824764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39312 0.314776 0 1.76893 12.076

CAGE analysis