Hb_014109_020

Information

Type transcription factor
Description TF Family: WRKY
Location Contig14109: 10278-13212
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01380g
description POPTRDRAFT_772348; hypothetical protein
nr
ID XP_012090116.1
description PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
swissprot
ID Q9SUP6
description Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1
trembl
ID S5CS92
description Uncharacterized protein OS=Jatropha curcas GN=WRKY53 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014109_020 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
2 Hb_012528_040 0.1083587621 - - -
3 Hb_000522_030 0.1185409715 - - hypothetical protein VITISV_006017 [Vitis vinifera]
4 Hb_005623_060 0.1203475846 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_004375_020 0.1211804169 - - hypothetical protein VITISV_034560 [Vitis vinifera]
6 Hb_002630_030 0.1244367571 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
7 Hb_011931_090 0.1271496141 - - -
8 Hb_001691_130 0.1308102067 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
9 Hb_032733_030 0.1338902001 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
10 Hb_004968_090 0.1370268824 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
11 Hb_000135_080 0.1387467962 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_005666_030 0.1399894903 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
13 Hb_000476_030 0.1414720068 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
14 Hb_000123_070 0.1421569416 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_005551_030 0.1439671009 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
16 Hb_001231_020 0.1497463874 - - -
17 Hb_000497_310 0.1516862456 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000512_050 0.154017269 - - hypothetical protein VITISV_005640 [Vitis vinifera]
19 Hb_161881_010 0.1560641145 - - laccase, putative [Ricinus communis]
20 Hb_000405_010 0.1563963665 - - hypothetical protein JCGZ_15779 [Jatropha curcas]

Gene co-expression network

sample Hb_014109_020 Hb_014109_020 Hb_012528_040 Hb_012528_040 Hb_014109_020--Hb_012528_040 Hb_000522_030 Hb_000522_030 Hb_014109_020--Hb_000522_030 Hb_005623_060 Hb_005623_060 Hb_014109_020--Hb_005623_060 Hb_004375_020 Hb_004375_020 Hb_014109_020--Hb_004375_020 Hb_002630_030 Hb_002630_030 Hb_014109_020--Hb_002630_030 Hb_011931_090 Hb_011931_090 Hb_014109_020--Hb_011931_090 Hb_161881_010 Hb_161881_010 Hb_012528_040--Hb_161881_010 Hb_000123_070 Hb_000123_070 Hb_012528_040--Hb_000123_070 Hb_001001_130 Hb_001001_130 Hb_012528_040--Hb_001001_130 Hb_002010_010 Hb_002010_010 Hb_012528_040--Hb_002010_010 Hb_000135_080 Hb_000135_080 Hb_012528_040--Hb_000135_080 Hb_000522_030--Hb_011931_090 Hb_150516_010 Hb_150516_010 Hb_000522_030--Hb_150516_010 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_000522_030--Hb_005623_060 Hb_000522_030--Hb_000135_080 Hb_000405_010 Hb_000405_010 Hb_000522_030--Hb_000405_010 Hb_000512_050 Hb_000512_050 Hb_005623_060--Hb_000512_050 Hb_005623_060--Hb_150516_010 Hb_003169_040 Hb_003169_040 Hb_005623_060--Hb_003169_040 Hb_080033_020 Hb_080033_020 Hb_005623_060--Hb_080033_020 Hb_004987_040 Hb_004987_040 Hb_004375_020--Hb_004987_040 Hb_000373_140 Hb_000373_140 Hb_004375_020--Hb_000373_140 Hb_004208_040 Hb_004208_040 Hb_004375_020--Hb_004208_040 Hb_101462_010 Hb_101462_010 Hb_004375_020--Hb_101462_010 Hb_004375_020--Hb_000123_070 Hb_010053_060 Hb_010053_060 Hb_004375_020--Hb_010053_060 Hb_001691_130 Hb_001691_130 Hb_002630_030--Hb_001691_130 Hb_004968_090 Hb_004968_090 Hb_002630_030--Hb_004968_090 Hb_005666_030 Hb_005666_030 Hb_002630_030--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_002630_030--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_002630_030--Hb_001231_020 Hb_000367_150 Hb_000367_150 Hb_002630_030--Hb_000367_150 Hb_011931_090--Hb_000405_010 Hb_011931_090--Hb_150516_010 Hb_011931_090--Hb_005623_060 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0198334 0.0609355 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0286081 0.58691

CAGE analysis