Hb_014109_040

Information

Type -
Description -
Location Contig14109: 26565-32796
Sequence    

Annotation

kegg
ID rcu:RCOM_1580570
description tetrahydrofolylpolyglutamate synthase, putative (EC:6.3.2.17)
nr
ID XP_012090121.1
description PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
swissprot
ID Q05865
description Folylpolyglutamate synthase OS=Bacillus subtilis (strain 168) GN=folC PE=3 SV=2
trembl
ID B9RIM1
description Tetrahydrofolylpolyglutamate synthase, putative OS=Ricinus communis GN=RCOM_1580570 PE=4 SV=1
Gene Ontology
ID GO:0004326
description folylpolyglutamate synthetase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11120: 26664-28236 , PASA_asmbl_11121: 26608-31045 , PASA_asmbl_11123: 32303-32887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014109_040 0.0 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
2 Hb_000589_120 0.0598068262 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
3 Hb_003125_120 0.0609593751 - - PREDICTED: TITAN-like protein [Jatropha curcas]
4 Hb_007576_080 0.0616612737 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
5 Hb_000563_230 0.0704135654 - - phospholipase d zeta, putative [Ricinus communis]
6 Hb_003935_020 0.0722699677 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000334_280 0.0723135085 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
8 Hb_001470_030 0.0730151109 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
9 Hb_001030_020 0.0755976922 - - Poly(A) polymerase alpha, putative [Ricinus communis]
10 Hb_002253_100 0.0760608807 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_008554_060 0.076323782 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
12 Hb_003780_030 0.0782620447 - - PREDICTED: protein CMSS1 [Jatropha curcas]
13 Hb_007423_040 0.0788701264 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
14 Hb_004837_240 0.0792232509 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
15 Hb_003428_030 0.080699962 - - tRNA, putative [Ricinus communis]
16 Hb_000152_500 0.0808094114 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
17 Hb_000959_210 0.0813939497 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
18 Hb_002585_040 0.0821809626 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_027472_040 0.083079099 - - SKP1 [Hevea brasiliensis]
20 Hb_005725_250 0.083444459 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_014109_040 Hb_014109_040 Hb_000589_120 Hb_000589_120 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_007576_080 Hb_007576_080 Hb_014109_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_008554_060 Hb_008554_060 Hb_000589_120--Hb_008554_060 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_000563_230--Hb_003125_120 Hb_000563_230--Hb_008453_140 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000340_400 Hb_000340_400 Hb_000563_230--Hb_000340_400 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_003935_020--Hb_002652_030 Hb_003878_070 Hb_003878_070 Hb_000334_280--Hb_003878_070 Hb_003525_010 Hb_003525_010 Hb_000334_280--Hb_003525_010 Hb_000334_280--Hb_000403_050 Hb_000484_030 Hb_000484_030 Hb_000334_280--Hb_000484_030 Hb_000215_110 Hb_000215_110 Hb_000334_280--Hb_000215_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.12681 7.46216 6.63351 6.71579 8.4923 7.32796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0208 14.815 5.13406 8.51042 6.3292

CAGE analysis