Hb_014231_010

Information

Type -
Description -
Location Contig14231: 12619-27590
Sequence    

Annotation

kegg
ID rcu:RCOM_0768090
description hypothetical protein
nr
ID XP_012081616.1
description PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
swissprot
ID Q08J23
description tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2
trembl
ID A0A067KD39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18654 PE=4 SV=1
Gene Ontology
ID GO:0008168
description trna (cytosine -c )-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014231_010 0.0 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
2 Hb_000347_390 0.1137244449 - - PREDICTED: exportin-T [Jatropha curcas]
3 Hb_001427_150 0.1177306043 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
4 Hb_005551_020 0.1178522271 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_000137_020 0.119664875 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
6 Hb_003768_050 0.1220584441 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
7 Hb_000703_200 0.1220714159 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
8 Hb_029243_020 0.1226989257 - - ENTH/VHS/GAT family protein [Theobroma cacao]
9 Hb_000009_410 0.1245044059 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
10 Hb_001951_170 0.1251720568 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_000024_040 0.1257713199 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
12 Hb_001167_050 0.1275259692 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
13 Hb_007234_010 0.128418968 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
14 Hb_077048_010 0.1287305862 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003014_030 0.1289203898 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
16 Hb_000661_260 0.129612151 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
17 Hb_000103_390 0.1302650552 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
18 Hb_001488_180 0.1313433311 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
19 Hb_005408_030 0.1327012097 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
20 Hb_002889_020 0.1329147421 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_014231_010 Hb_014231_010 Hb_000347_390 Hb_000347_390 Hb_014231_010--Hb_000347_390 Hb_001427_150 Hb_001427_150 Hb_014231_010--Hb_001427_150 Hb_005551_020 Hb_005551_020 Hb_014231_010--Hb_005551_020 Hb_000137_020 Hb_000137_020 Hb_014231_010--Hb_000137_020 Hb_003768_050 Hb_003768_050 Hb_014231_010--Hb_003768_050 Hb_000703_200 Hb_000703_200 Hb_014231_010--Hb_000703_200 Hb_000024_040 Hb_000024_040 Hb_000347_390--Hb_000024_040 Hb_001473_110 Hb_001473_110 Hb_000347_390--Hb_001473_110 Hb_000347_390--Hb_003768_050 Hb_000347_400 Hb_000347_400 Hb_000347_390--Hb_000347_400 Hb_000347_390--Hb_005551_020 Hb_000017_220 Hb_000017_220 Hb_000347_390--Hb_000017_220 Hb_011249_060 Hb_011249_060 Hb_001427_150--Hb_011249_060 Hb_004899_040 Hb_004899_040 Hb_001427_150--Hb_004899_040 Hb_009302_030 Hb_009302_030 Hb_001427_150--Hb_009302_030 Hb_001488_040 Hb_001488_040 Hb_001427_150--Hb_001488_040 Hb_002928_190 Hb_002928_190 Hb_001427_150--Hb_002928_190 Hb_005765_040 Hb_005765_040 Hb_001427_150--Hb_005765_040 Hb_005551_020--Hb_001473_110 Hb_005551_020--Hb_003768_050 Hb_002234_090 Hb_002234_090 Hb_005551_020--Hb_002234_090 Hb_005551_020--Hb_000347_400 Hb_005551_020--Hb_000024_040 Hb_011161_020 Hb_011161_020 Hb_000137_020--Hb_011161_020 Hb_000137_020--Hb_005551_020 Hb_000574_420 Hb_000574_420 Hb_000137_020--Hb_000574_420 Hb_000137_020--Hb_001427_150 Hb_009367_080 Hb_009367_080 Hb_000137_020--Hb_009367_080 Hb_003768_050--Hb_002234_090 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_003768_050--Hb_000017_220 Hb_000703_200--Hb_009302_030 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.832753 2.02805 0.922731 0.628247 0.271841 1.09099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372757 0.504527 0.897393 1.57319 1.07594

CAGE analysis