Hb_014267_010

Information

Type -
Description -
Location Contig14267: 40061-58975
Sequence    

Annotation

kegg
ID rcu:RCOM_0925750
description heat shock protein binding protein, putative
nr
ID XP_012078679.1
description PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
swissprot
ID F4IVL6
description DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1 SV=1
trembl
ID B9RP99
description Heat shock protein binding protein, putative OS=Ricinus communis GN=RCOM_0925750 PE=4 SV=1
Gene Ontology
ID GO:0005770
description dnaj homolog subfamily c grv2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11300: 40444-43884 , PASA_asmbl_11301: 43985-45025 , PASA_asmbl_11302: 45043-58888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014267_010 0.0 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
2 Hb_012656_030 0.06027381 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
3 Hb_000318_390 0.0616896355 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
4 Hb_001967_030 0.0618192783 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
5 Hb_000796_030 0.0656904947 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
6 Hb_004228_010 0.0665595995 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
7 Hb_010417_050 0.0673812291 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
8 Hb_000035_290 0.0694612943 - - RNA recognition motif-containing family protein [Populus trichocarpa]
9 Hb_006637_050 0.0741796162 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
10 Hb_001268_350 0.0749558488 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
11 Hb_000343_120 0.0759593691 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
12 Hb_001199_100 0.0761211806 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
13 Hb_000166_130 0.0777353469 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000796_040 0.0791867699 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000183_020 0.079275992 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_003044_020 0.0794509136 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_001472_090 0.0795865441 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_002784_110 0.0798499403 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
19 Hb_025194_040 0.0800122565 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
20 Hb_001913_060 0.0801192037 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_014267_010 Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_000318_390--Hb_003440_050 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_000796_040 Hb_000796_040 Hb_004228_010--Hb_000796_040 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3277 18.6663 5.89843 8.42129 19.6235 21.2814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98885 8.8274 17.6867 13.38 14.7092

CAGE analysis