Hb_014361_100

Information

Type -
Description -
Location Contig14361: 80560-87295
Sequence    

Annotation

kegg
ID cam:101511815
description casein kinase II subunit alpha-2-like
nr
ID XP_004509081.1
description PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
swissprot
ID Q08467
description Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3
trembl
ID I1K2C5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004672
description casein kinase ii subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11459: 80474-86445 , PASA_asmbl_11460: 80876-81197 , PASA_asmbl_11461: 81238-81435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_100 0.0 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
2 Hb_000329_390 0.089063975 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_001348_050 0.0906026958 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000236_380 0.0964204909 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
5 Hb_001584_290 0.098466432 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_000322_090 0.1074519003 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
7 Hb_000042_270 0.1090902444 - - myosin vIII, putative [Ricinus communis]
8 Hb_004030_050 0.1097325377 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
9 Hb_022256_040 0.1104905977 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
10 Hb_000933_090 0.111907148 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
11 Hb_000048_140 0.1132536697 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
12 Hb_028639_010 0.1136982117 - - transporter, putative [Ricinus communis]
13 Hb_004837_190 0.1163678775 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
14 Hb_011316_110 0.1171240184 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
15 Hb_002255_050 0.1195264641 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000883_130 0.1202882536 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
17 Hb_002587_020 0.1207163618 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_008143_030 0.1212008913 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
19 Hb_014720_160 0.1222925824 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
20 Hb_148909_010 0.1223319317 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_014361_100 Hb_014361_100 Hb_000329_390 Hb_000329_390 Hb_014361_100--Hb_000329_390 Hb_001348_050 Hb_001348_050 Hb_014361_100--Hb_001348_050 Hb_000236_380 Hb_000236_380 Hb_014361_100--Hb_000236_380 Hb_001584_290 Hb_001584_290 Hb_014361_100--Hb_001584_290 Hb_000322_090 Hb_000322_090 Hb_014361_100--Hb_000322_090 Hb_000042_270 Hb_000042_270 Hb_014361_100--Hb_000042_270 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_000329_390--Hb_001348_050 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_002997_100 Hb_002997_100 Hb_000329_390--Hb_002997_100 Hb_001348_050--Hb_000236_380 Hb_000592_080 Hb_000592_080 Hb_001348_050--Hb_000592_080 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_007592_030 Hb_007592_030 Hb_001348_050--Hb_007592_030 Hb_002400_470 Hb_002400_470 Hb_000236_380--Hb_002400_470 Hb_008864_110 Hb_008864_110 Hb_000236_380--Hb_008864_110 Hb_002255_050 Hb_002255_050 Hb_000236_380--Hb_002255_050 Hb_000236_380--Hb_007592_030 Hb_057878_010 Hb_057878_010 Hb_000236_380--Hb_057878_010 Hb_008143_030 Hb_008143_030 Hb_001584_290--Hb_008143_030 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_000104_080 Hb_000104_080 Hb_001584_290--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_000923_040 Hb_000923_040 Hb_001584_290--Hb_000923_040 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220 Hb_003018_060 Hb_003018_060 Hb_000322_090--Hb_003018_060 Hb_004837_190 Hb_004837_190 Hb_000322_090--Hb_004837_190 Hb_000123_090 Hb_000123_090 Hb_000322_090--Hb_000123_090 Hb_028390_010 Hb_028390_010 Hb_000322_090--Hb_028390_010 Hb_000322_090--Hb_001584_290 Hb_000197_210 Hb_000197_210 Hb_000042_270--Hb_000197_210 Hb_006816_390 Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.3434 17.2348 28.8587 42.303 110.54 70.018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9098 22.3567 64.047 30.3648 26.9663

CAGE analysis