Hb_014361_120

Information

Type -
Description -
Location Contig14361: 100487-104259
Sequence    

Annotation

kegg
ID rcu:RCOM_0396200
description Root phototropism protein, putative
nr
ID XP_012079373.1
description PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
swissprot
ID Q66GP0
description BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=1 SV=2
trembl
ID A0A067K7F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12513 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11463: 100754-101241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_120 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
2 Hb_000545_180 0.055158247 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
3 Hb_000352_230 0.0559162715 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_002289_070 0.0570717642 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
5 Hb_009771_090 0.059239468 - - -
6 Hb_011381_120 0.0686160034 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
7 Hb_000098_040 0.0730048821 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
8 Hb_000307_100 0.0756931035 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
9 Hb_000111_460 0.0759037052 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
10 Hb_002809_030 0.0776666908 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002701_250 0.0781204842 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_000826_010 0.079031722 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002534_090 0.0805290733 - - geranylgeranyl reductase [Hevea brasiliensis]
14 Hb_001269_030 0.081718449 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_002818_130 0.0817204353 - - cytochrome P450, putative [Ricinus communis]
16 Hb_023344_040 0.0869048405 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001517_060 0.0872714587 - - phosphoribulose kinase, putative [Ricinus communis]
18 Hb_000329_430 0.0925734375 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
19 Hb_000009_470 0.0927899315 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_004712_230 0.0933106492 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_014361_120 Hb_014361_120 Hb_000545_180 Hb_000545_180 Hb_014361_120--Hb_000545_180 Hb_000352_230 Hb_000352_230 Hb_014361_120--Hb_000352_230 Hb_002289_070 Hb_002289_070 Hb_014361_120--Hb_002289_070 Hb_009771_090 Hb_009771_090 Hb_014361_120--Hb_009771_090 Hb_011381_120 Hb_011381_120 Hb_014361_120--Hb_011381_120 Hb_000098_040 Hb_000098_040 Hb_014361_120--Hb_000098_040 Hb_000545_180--Hb_000352_230 Hb_000545_180--Hb_009771_090 Hb_000545_180--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000545_180--Hb_001269_030 Hb_001416_130 Hb_001416_130 Hb_000545_180--Hb_001416_130 Hb_000352_230--Hb_009771_090 Hb_000352_230--Hb_000098_040 Hb_002809_030 Hb_002809_030 Hb_000352_230--Hb_002809_030 Hb_000307_100 Hb_000307_100 Hb_000352_230--Hb_000307_100 Hb_002534_090 Hb_002534_090 Hb_002289_070--Hb_002534_090 Hb_001517_060 Hb_001517_060 Hb_002289_070--Hb_001517_060 Hb_002289_070--Hb_011381_120 Hb_002701_250 Hb_002701_250 Hb_002289_070--Hb_002701_250 Hb_009093_020 Hb_009093_020 Hb_002289_070--Hb_009093_020 Hb_009771_090--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_009771_090--Hb_000329_430 Hb_009771_090--Hb_000307_100 Hb_011381_120--Hb_009093_020 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_000841_040 Hb_000841_040 Hb_011381_120--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_011381_120--Hb_000111_460 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_003090_050 Hb_003090_050 Hb_011381_120--Hb_003090_050 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_002809_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.9057 9.61908 5.2355 0.0215368 0.00702838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102066 0.0267717 0 0.0371997 32.6328

CAGE analysis