Hb_014497_020

Information

Type -
Description -
Location Contig14497: 23468-31312
Sequence    

Annotation

kegg
ID vvi:100244096
description SNRNP200; U5 small nuclear ribonucleoprotein 200 kDa helicase
nr
ID XP_012073544.1
description PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
swissprot
ID O75643
description U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2
trembl
ID A0A067KKI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08017 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u5 small nuclear ribonucleoprotein 200 kda helicase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11692: 23217-31226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_020 0.0 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
2 Hb_007576_210 0.0654435147 - - PREDICTED: protein furry homolog [Jatropha curcas]
3 Hb_003895_040 0.0669059705 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
4 Hb_001124_050 0.0712677421 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
5 Hb_003211_040 0.0778107441 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
6 Hb_001662_180 0.0783142158 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
7 Hb_009486_170 0.0797537291 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
8 Hb_001085_030 0.0811347662 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
9 Hb_007120_060 0.0849095747 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_001133_030 0.0861366663 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
11 Hb_011609_150 0.0872950952 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
12 Hb_000105_030 0.0904127554 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
13 Hb_000175_120 0.0908122314 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
14 Hb_002521_020 0.0941294895 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
15 Hb_007632_010 0.0969175947 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
16 Hb_000086_690 0.0969279343 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
17 Hb_002095_070 0.0979987522 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
18 Hb_001699_280 0.0983535477 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
19 Hb_000574_530 0.098646176 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
20 Hb_000003_410 0.0988514989 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]

Gene co-expression network

sample Hb_014497_020 Hb_014497_020 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_009486_170 Hb_009486_170 Hb_014497_020--Hb_009486_170 Hb_007576_210--Hb_009486_170 Hb_001699_280 Hb_001699_280 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_002333_050 Hb_002333_050 Hb_007576_210--Hb_002333_050 Hb_007576_210--Hb_003211_040 Hb_001054_120 Hb_001054_120 Hb_003895_040--Hb_001054_120 Hb_000512_030 Hb_000512_030 Hb_003895_040--Hb_000512_030 Hb_003895_040--Hb_007576_210 Hb_003895_040--Hb_001124_050 Hb_007120_060 Hb_007120_060 Hb_003895_040--Hb_007120_060 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_002095_070 Hb_002095_070 Hb_003211_040--Hb_002095_070 Hb_011947_050 Hb_011947_050 Hb_003211_040--Hb_011947_050 Hb_003119_080 Hb_003119_080 Hb_003211_040--Hb_003119_080 Hb_002909_120 Hb_002909_120 Hb_003211_040--Hb_002909_120 Hb_003211_040--Hb_009486_170 Hb_001662_180--Hb_001699_280 Hb_001662_180--Hb_001951_170 Hb_000175_120 Hb_000175_120 Hb_001662_180--Hb_000175_120 Hb_001662_180--Hb_001124_050 Hb_005832_010 Hb_005832_010 Hb_001662_180--Hb_005832_010 Hb_009486_170--Hb_001133_030 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7939 40.357 9.69825 16.4071 19.3737 21.3005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78236 4.96597 10.9505 31.2154 34.5552

CAGE analysis