Hb_014497_080

Information

Type -
Description -
Location Contig14497: 60572-65051
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00530g
description POPTRDRAFT_753848; auxin efflux carrier family protein
nr
ID XP_012073557.1
description PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID A0A067KY45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08025 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11701: 60687-62735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_080 0.0 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
2 Hb_000062_300 0.0795133697 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
3 Hb_003732_040 0.150871198 - - putative esterase family protein [Populus trichocarpa]
4 Hb_033834_050 0.1851476714 - - conserved hypothetical protein [Ricinus communis]
5 Hb_042871_010 0.1928055895 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
6 Hb_003398_020 0.1996486737 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
7 Hb_086692_020 0.2104205193 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
8 Hb_012573_010 0.2121449083 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
9 Hb_000012_070 0.2159623597 - - cytochrome P450, putative [Ricinus communis]
10 Hb_006277_070 0.2184452935 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000656_410 0.2201474335 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
12 Hb_002784_100 0.2208487492 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
13 Hb_000258_180 0.2231465209 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
14 Hb_001266_030 0.223739056 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
15 Hb_028271_020 0.2286719808 - - acyl-CoA oxidase, putative [Ricinus communis]
16 Hb_011609_110 0.2300225564 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
17 Hb_012305_020 0.2307251376 - - beta-1,3-glucanase [Hevea brasiliensis]
18 Hb_003891_080 0.2353367077 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
19 Hb_006469_120 0.2371373192 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
20 Hb_000045_210 0.2397279698 - - -

Gene co-expression network

sample Hb_014497_080 Hb_014497_080 Hb_000062_300 Hb_000062_300 Hb_014497_080--Hb_000062_300 Hb_003732_040 Hb_003732_040 Hb_014497_080--Hb_003732_040 Hb_033834_050 Hb_033834_050 Hb_014497_080--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_014497_080--Hb_042871_010 Hb_003398_020 Hb_003398_020 Hb_014497_080--Hb_003398_020 Hb_086692_020 Hb_086692_020 Hb_014497_080--Hb_086692_020 Hb_000062_300--Hb_003732_040 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_000062_300--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080 Hb_006277_070 Hb_006277_070 Hb_003732_040--Hb_006277_070 Hb_003732_040--Hb_042871_010 Hb_003732_040--Hb_033834_050 Hb_147793_010 Hb_147793_010 Hb_003732_040--Hb_147793_010 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_033834_050--Hb_011609_110 Hb_033834_050--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_042871_010--Hb_000656_410 Hb_042871_010--Hb_011609_110 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_003398_020--Hb_000239_110 Hb_003376_380 Hb_003376_380 Hb_003398_020--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_003398_020--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_003398_020--Hb_007313_080 Hb_002900_130 Hb_002900_130 Hb_003398_020--Hb_002900_130 Hb_003398_020--Hb_001449_100 Hb_003398_140 Hb_003398_140 Hb_086692_020--Hb_003398_140 Hb_012305_020 Hb_012305_020 Hb_086692_020--Hb_012305_020 Hb_061383_010 Hb_061383_010 Hb_086692_020--Hb_061383_010 Hb_001266_030 Hb_001266_030 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_001396_090 Hb_001396_090 Hb_086692_020--Hb_001396_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0776413 0.100687 0.414764 0.60718 0.0250819 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.589302 9.319 0.829077 1.75692 0.145791

CAGE analysis