Hb_014497_100

Information

Type -
Description -
Location Contig14497: 78310-85422
Sequence    

Annotation

kegg
ID rcu:RCOM_1602230
description transcription factor, putative
nr
ID XP_012073561.1
description PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
swissprot
ID Q0WNR6
description AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=1 SV=1
trembl
ID B9R8U2
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1602230 PE=3 SV=1
Gene Ontology
ID GO:0005634
description at-rich interactive domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_100 0.0 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
2 Hb_001178_010 0.0650557769 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
3 Hb_002316_140 0.0709439334 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
4 Hb_000537_100 0.0795499947 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
5 Hb_004129_090 0.083956036 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
6 Hb_005946_040 0.087193224 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
7 Hb_000163_260 0.0902239779 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
8 Hb_000926_080 0.0916377818 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_000035_160 0.0990970572 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
10 Hb_073973_090 0.0995304245 - - Aminotransferase ybdL, putative [Ricinus communis]
11 Hb_001882_010 0.0996080426 - - -
12 Hb_005494_010 0.1004975826 - - catalytic, putative [Ricinus communis]
13 Hb_009476_130 0.100702807 - - hypothetical protein VITISV_005430 [Vitis vinifera]
14 Hb_113853_010 0.1009502481 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_021576_150 0.1015959499 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
16 Hb_146255_020 0.1021632027 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
17 Hb_000003_780 0.102695084 - - hexokinase [Manihot esculenta]
18 Hb_010098_020 0.1039844354 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_001900_140 0.1040680026 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
20 Hb_000926_200 0.1045903743 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_014497_100 Hb_014497_100 Hb_001178_010 Hb_001178_010 Hb_014497_100--Hb_001178_010 Hb_002316_140 Hb_002316_140 Hb_014497_100--Hb_002316_140 Hb_000537_100 Hb_000537_100 Hb_014497_100--Hb_000537_100 Hb_004129_090 Hb_004129_090 Hb_014497_100--Hb_004129_090 Hb_005946_040 Hb_005946_040 Hb_014497_100--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_014497_100--Hb_000163_260 Hb_001178_010--Hb_000537_100 Hb_001178_010--Hb_002316_140 Hb_001178_010--Hb_004129_090 Hb_001900_140 Hb_001900_140 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_002316_140--Hb_000537_100 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_000537_100--Hb_005946_040 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_004129_090--Hb_010098_020 Hb_004129_090--Hb_002316_140 Hb_001623_100 Hb_001623_100 Hb_004129_090--Hb_001623_100 Hb_001541_110 Hb_001541_110 Hb_004129_090--Hb_001541_110 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_005946_040--Hb_029622_120 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_001504_010 Hb_001504_010 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64273 9.16629 25.7544 14.045 5.19519 6.4023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3557 13.3202 5.40376 6.61662 15.0961

CAGE analysis