Hb_014568_030

Information

Type -
Description -
Location Contig14568: 11959-14536
Sequence    

Annotation

kegg
ID rcu:RCOM_0401210
description hypothetical protein
nr
ID XP_012078088.1
description PREDICTED: F-box protein CPR30-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067KM83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box protein cpr30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11830: 12172-12628 , PASA_asmbl_11831: 12635-14297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014568_030 0.0 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
2 Hb_000077_050 0.06433491 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001584_110 0.0643852523 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
4 Hb_002014_080 0.0697832431 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
5 Hb_024714_030 0.0768307183 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
6 Hb_001855_010 0.0776356162 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
7 Hb_011282_030 0.082634354 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
8 Hb_008453_150 0.083791143 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
9 Hb_185467_020 0.0842176572 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_000390_060 0.0843939343 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
11 Hb_000236_250 0.0867867809 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000671_100 0.0874744585 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
13 Hb_002215_050 0.0875039145 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_002631_050 0.0901092112 - - membrane associated ring finger 1,8, putative [Ricinus communis]
15 Hb_003638_140 0.0905343506 - - protein binding protein, putative [Ricinus communis]
16 Hb_005288_120 0.0909929084 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
17 Hb_000462_150 0.0918921474 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
18 Hb_003352_050 0.0939175389 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
19 Hb_012760_170 0.0954935467 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_000230_330 0.0955234289 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]

Gene co-expression network

sample Hb_014568_030 Hb_014568_030 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_001584_110--Hb_000462_150 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_005754_060 Hb_005754_060 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010 Hb_011282_030--Hb_000230_330 Hb_022256_040 Hb_022256_040 Hb_011282_030--Hb_022256_040 Hb_011282_030--Hb_000462_150 Hb_010222_030 Hb_010222_030 Hb_011282_030--Hb_010222_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.669 23.1271 17.3193 32.8833 125.967 194.535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.7595 58.9397 99.7424 30.2637 28.8827

CAGE analysis