Hb_014613_010

Information

Type -
Description -
Location Contig14613: 852-2213
Sequence    

Annotation

kegg
ID tcc:TCM_043384
description DNA/RNA polymerases superfamily protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FNI4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014613_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000802_110 0.2201464671 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_000343_180 0.2384170972 - - NDWp3 [Podospora anserina]
4 Hb_002686_120 0.2490105191 - - short-chain type dehydrogenase, putative [Ricinus communis]
5 Hb_000260_290 0.2647466905 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
6 Hb_002035_110 0.2781557736 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
7 Hb_000676_270 0.2832214523 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
8 Hb_004020_060 0.2939482448 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_036790_020 0.2952247893 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
10 Hb_027467_010 0.2983361857 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
11 Hb_000990_060 0.3000993061 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
12 Hb_001894_090 0.302952382 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
13 Hb_001189_140 0.3072952411 - - -
14 Hb_000210_090 0.3074605916 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
15 Hb_007747_180 0.3092420121 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
16 Hb_000111_480 0.3099195362 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
17 Hb_024468_020 0.3101413835 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_001621_070 0.3142474523 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
19 Hb_004631_210 0.3145634028 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
20 Hb_003327_070 0.3186626323 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]

Gene co-expression network

sample Hb_014613_010 Hb_014613_010 Hb_000802_110 Hb_000802_110 Hb_014613_010--Hb_000802_110 Hb_000343_180 Hb_000343_180 Hb_014613_010--Hb_000343_180 Hb_002686_120 Hb_002686_120 Hb_014613_010--Hb_002686_120 Hb_000260_290 Hb_000260_290 Hb_014613_010--Hb_000260_290 Hb_002035_110 Hb_002035_110 Hb_014613_010--Hb_002035_110 Hb_000676_270 Hb_000676_270 Hb_014613_010--Hb_000676_270 Hb_000802_110--Hb_000343_180 Hb_168707_040 Hb_168707_040 Hb_000802_110--Hb_168707_040 Hb_000672_150 Hb_000672_150 Hb_000802_110--Hb_000672_150 Hb_000802_110--Hb_002686_120 Hb_001894_090 Hb_001894_090 Hb_000802_110--Hb_001894_090 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_002686_120--Hb_002035_110 Hb_000111_480 Hb_000111_480 Hb_002686_120--Hb_000111_480 Hb_006573_300 Hb_006573_300 Hb_002686_120--Hb_006573_300 Hb_004631_210 Hb_004631_210 Hb_002686_120--Hb_004631_210 Hb_006453_010 Hb_006453_010 Hb_002686_120--Hb_006453_010 Hb_002686_120--Hb_000343_180 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_001049_020 Hb_001049_020 Hb_002035_110--Hb_001049_020 Hb_002035_110--Hb_004631_210 Hb_000948_080 Hb_000948_080 Hb_002035_110--Hb_000948_080 Hb_002374_380 Hb_002374_380 Hb_002035_110--Hb_002374_380 Hb_002035_110--Hb_000343_180 Hb_000676_270--Hb_000802_110 Hb_000676_270--Hb_000672_150 Hb_002660_060 Hb_002660_060 Hb_000676_270--Hb_002660_060 Hb_000676_270--Hb_168707_040 Hb_000676_270--Hb_000343_180 Hb_005048_050 Hb_005048_050 Hb_000676_270--Hb_005048_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.100157 0.0263418 0.0136788 0.0167644 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0763451 0.0300282 0.112005 0.0721077 0

CAGE analysis