Hb_014700_030

Information

Type -
Description -
Location Contig14700: 28912-29812
Sequence    

Annotation

kegg
ID rcu:RCOM_0905390
description tryptophan synthase beta chain, putative (EC:1.3.1.74)
nr
ID XP_002518519.1
description tryptophan synthase beta chain, putative [Ricinus communis]
swissprot
ID P43283
description Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1
trembl
ID B9RXQ0
description Tryptophan synthase beta chain, putative OS=Ricinus communis GN=RCOM_0905390 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014700_030 0.0 - - tryptophan synthase beta chain, putative [Ricinus communis]
2 Hb_001789_120 0.0574079684 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
3 Hb_004880_050 0.059817871 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010222_060 0.0607024585 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_032779_010 0.0632566414 - - unnamed protein product [Vitis vinifera]
6 Hb_013394_120 0.0741530797 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
7 Hb_132840_170 0.0800479568 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
8 Hb_009522_020 0.0837854534 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
9 Hb_005051_010 0.0838755417 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_000427_040 0.0908579417 - - Gibberellin receptor GID1, putative [Ricinus communis]
11 Hb_000120_480 0.0917723195 - - -
12 Hb_162676_010 0.0927565758 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000818_090 0.0952441122 - - glutamate receptor 3 plant, putative [Ricinus communis]
14 Hb_173387_010 0.1037512393 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
15 Hb_003226_230 0.105071245 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
16 Hb_001046_030 0.1116224195 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_005723_090 0.1123588846 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002713_060 0.1139881135 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
19 Hb_001417_060 0.1147590036 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
20 Hb_031862_120 0.1147764668 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_014700_030 Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_014700_030--Hb_001789_120 Hb_004880_050 Hb_004880_050 Hb_014700_030--Hb_004880_050 Hb_010222_060 Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_032779_010 Hb_032779_010 Hb_014700_030--Hb_032779_010 Hb_013394_120 Hb_013394_120 Hb_014700_030--Hb_013394_120 Hb_132840_170 Hb_132840_170 Hb_014700_030--Hb_132840_170 Hb_001789_120--Hb_013394_120 Hb_000818_090 Hb_000818_090 Hb_001789_120--Hb_000818_090 Hb_001789_120--Hb_004880_050 Hb_001789_120--Hb_010222_060 Hb_001789_120--Hb_132840_170 Hb_004880_050--Hb_032779_010 Hb_004880_050--Hb_000818_090 Hb_004880_050--Hb_013394_120 Hb_004880_050--Hb_010222_060 Hb_010222_060--Hb_013394_120 Hb_009522_020 Hb_009522_020 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_000427_040 Hb_000427_040 Hb_032779_010--Hb_000427_040 Hb_032779_010--Hb_001789_120 Hb_005051_010 Hb_005051_010 Hb_032779_010--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_032779_010--Hb_002902_070 Hb_013394_120--Hb_132840_170 Hb_013394_120--Hb_000818_090 Hb_013394_120--Hb_009522_020 Hb_173387_010 Hb_173387_010 Hb_132840_170--Hb_173387_010 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_132840_170--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.190891 0.19998 0.275337 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0415442 0.413413

CAGE analysis