Hb_014720_010

Information

Type -
Description -
Location Contig14720: 4863-7167
Sequence    

Annotation

kegg
ID rcu:RCOM_1510560
description hypothetical protein
nr
ID XP_002511397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FJJ3
description Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1
trembl
ID B9RB22
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510560 PE=4 SV=1
Gene Ontology
ID GO:0003950
description probable inactive poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11941: 4887-7397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000130_450 0.1811509416 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005375_050 0.1994568904 - - inorganic pyrophosphatase, putative [Ricinus communis]
4 Hb_000008_380 0.2069366981 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_011512_160 0.2249055369 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000878_140 0.244608489 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
7 Hb_004129_160 0.2689241489 - - small heat-shock protein, putative [Ricinus communis]
8 Hb_000200_200 0.2710418835 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
9 Hb_001959_010 0.2790952945 - - myosin XI, putative [Ricinus communis]
10 Hb_089889_010 0.2802759708 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
11 Hb_000487_120 0.2808711373 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003399_100 0.2823351567 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
13 Hb_001141_110 0.2928195969 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
14 Hb_002045_190 0.2928854652 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
15 Hb_004116_100 0.2936420773 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
16 Hb_000394_110 0.294565121 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_000264_120 0.2983130833 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_000155_090 0.2987745179 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
19 Hb_000152_210 0.2992030567 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000703_040 0.2993438845 - - hypothetical protein RCOM_1177160 [Ricinus communis]

Gene co-expression network

sample Hb_014720_010 Hb_014720_010 Hb_000130_450 Hb_000130_450 Hb_014720_010--Hb_000130_450 Hb_005375_050 Hb_005375_050 Hb_014720_010--Hb_005375_050 Hb_000008_380 Hb_000008_380 Hb_014720_010--Hb_000008_380 Hb_011512_160 Hb_011512_160 Hb_014720_010--Hb_011512_160 Hb_000878_140 Hb_000878_140 Hb_014720_010--Hb_000878_140 Hb_004129_160 Hb_004129_160 Hb_014720_010--Hb_004129_160 Hb_000200_200 Hb_000200_200 Hb_000130_450--Hb_000200_200 Hb_000130_450--Hb_005375_050 Hb_000130_450--Hb_000008_380 Hb_005656_190 Hb_005656_190 Hb_000130_450--Hb_005656_190 Hb_000027_040 Hb_000027_040 Hb_000130_450--Hb_000027_040 Hb_003399_100 Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_005375_050--Hb_002045_190 Hb_089889_010 Hb_089889_010 Hb_005375_050--Hb_089889_010 Hb_004116_120 Hb_004116_120 Hb_005375_050--Hb_004116_120 Hb_000008_380--Hb_000878_140 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_000008_380--Hb_005375_050 Hb_000008_380--Hb_011512_160 Hb_003055_110 Hb_003055_110 Hb_011512_160--Hb_003055_110 Hb_004116_100 Hb_004116_100 Hb_011512_160--Hb_004116_100 Hb_011512_160--Hb_089889_010 Hb_000740_040 Hb_000740_040 Hb_011512_160--Hb_000740_040 Hb_068194_010 Hb_068194_010 Hb_011512_160--Hb_068194_010 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_000878_140--Hb_007943_060 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_001141_110 Hb_001141_110 Hb_004129_160--Hb_001141_110 Hb_004679_060 Hb_004679_060 Hb_004129_160--Hb_004679_060 Hb_004129_160--Hb_005656_190 Hb_147752_010 Hb_147752_010 Hb_004129_160--Hb_147752_010 Hb_170426_010 Hb_170426_010 Hb_004129_160--Hb_170426_010 Hb_000045_210 Hb_000045_210 Hb_004129_160--Hb_000045_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1866 1.64638 72.9723 8.03591 0.197539 0.131154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9808 55.1112 27.4775 12.6638 0.74044

CAGE analysis