Hb_014720_100

Information

Type -
Description -
Location Contig14720: 131413-136256
Sequence    

Annotation

kegg
ID rcu:RCOM_1510470
description Boron transporter, putative
nr
ID XP_012080056.1
description PREDICTED: probable boron transporter 2 [Jatropha curcas]
swissprot
ID Q9M1P7
description Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1
trembl
ID A0A067KFQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11466 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11963: 130773-136488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_100 0.0 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
2 Hb_178968_040 0.1267000703 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017002_010 0.1423126633 - - PREDICTED: expansin-A15-like [Jatropha curcas]
4 Hb_008695_220 0.1796857317 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
5 Hb_005529_020 0.1809520928 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
6 Hb_002686_260 0.1832255998 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
7 Hb_003875_010 0.1883680015 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
8 Hb_001635_010 0.1889661433 - - -
9 Hb_003813_010 0.19071267 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
10 Hb_001922_030 0.2078092843 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
11 Hb_020805_140 0.212400465 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
12 Hb_007574_040 0.2133375134 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
13 Hb_104571_010 0.2170901858 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_000054_010 0.2175981832 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
15 Hb_026527_010 0.2239071891 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
16 Hb_003536_090 0.2244939568 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_048384_010 0.2254855745 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
18 Hb_034726_010 0.2255556188 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_001186_110 0.2290599745 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
20 Hb_000345_080 0.2302690359 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]

Gene co-expression network

sample Hb_014720_100 Hb_014720_100 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_178968_040--Hb_017002_010 Hb_004079_050 Hb_004079_050 Hb_178968_040--Hb_004079_050 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_004125_070 Hb_004125_070 Hb_178968_040--Hb_004125_070 Hb_017002_010--Hb_008695_220 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_017002_010--Hb_004079_050 Hb_008695_220--Hb_007574_040 Hb_000950_030 Hb_000950_030 Hb_008695_220--Hb_000950_030 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_001195_670 Hb_001195_670 Hb_005529_020--Hb_001195_670 Hb_000450_170 Hb_000450_170 Hb_005529_020--Hb_000450_170 Hb_001186_110 Hb_001186_110 Hb_005529_020--Hb_001186_110 Hb_003001_050 Hb_003001_050 Hb_005529_020--Hb_003001_050 Hb_006538_160 Hb_006538_160 Hb_005529_020--Hb_006538_160 Hb_005332_040 Hb_005332_040 Hb_002686_260--Hb_005332_040 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_005408_070 Hb_005408_070 Hb_002686_260--Hb_005408_070 Hb_123301_010 Hb_123301_010 Hb_002686_260--Hb_123301_010 Hb_001195_720 Hb_001195_720 Hb_003875_010--Hb_001195_720 Hb_104571_010 Hb_104571_010 Hb_003875_010--Hb_104571_010 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003207_150 Hb_003207_150 Hb_003875_010--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_003875_010--Hb_001366_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.902935 0.971961 3.20351 29.4589 0.146302 0.216352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98992 3.16671 0.671111 2.00413 3.4826

CAGE analysis