Hb_014720_140

Information

Type -
Description -
Location Contig14720: 160247-162062
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08930g
description POPTRDRAFT_776100; hypothetical protein
nr
ID XP_012080046.1
description PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11460 PE=4 SV=1
Gene Ontology
ID GO:0016740
description udp-n-acetylglucosamine--n-acetylmuramyl- pyrophosphoryl-undecaprenol n-acetylglucosamine transferase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11973: 160034-160448 , PASA_asmbl_11974: 161033-162273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_140 0.0 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
2 Hb_000645_260 0.0886706521 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
3 Hb_000302_360 0.0906788806 - - beta-carotene hydroxylase, putative [Ricinus communis]
4 Hb_010534_040 0.1108208856 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
5 Hb_012833_010 0.1109399868 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_000313_250 0.1120657074 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
7 Hb_033006_020 0.1128597761 - - Aspartate aminotransferase, putative [Ricinus communis]
8 Hb_015934_060 0.1144758554 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
9 Hb_011472_030 0.1182336476 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
10 Hb_000020_090 0.1197908074 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
11 Hb_000116_220 0.1224338043 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001377_120 0.1260321407 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
13 Hb_000127_100 0.126295063 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
14 Hb_000982_100 0.1266092093 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
15 Hb_004102_060 0.1268071038 - - JHL25H03.11 [Jatropha curcas]
16 Hb_000007_330 0.1272261572 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_060534_010 0.1274519949 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
18 Hb_000890_170 0.1277930407 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
19 Hb_001269_060 0.1282855294 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
20 Hb_029695_090 0.1310452067 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_014720_140 Hb_014720_140 Hb_000645_260 Hb_000645_260 Hb_014720_140--Hb_000645_260 Hb_000302_360 Hb_000302_360 Hb_014720_140--Hb_000302_360 Hb_010534_040 Hb_010534_040 Hb_014720_140--Hb_010534_040 Hb_012833_010 Hb_012833_010 Hb_014720_140--Hb_012833_010 Hb_000313_250 Hb_000313_250 Hb_014720_140--Hb_000313_250 Hb_033006_020 Hb_033006_020 Hb_014720_140--Hb_033006_020 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_000645_260--Hb_000302_360 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_000302_360--Hb_010534_040 Hb_000302_360--Hb_001269_060 Hb_001606_010 Hb_001606_010 Hb_000302_360--Hb_001606_010 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_000486_020 Hb_000486_020 Hb_010534_040--Hb_000486_020 Hb_001352_030 Hb_001352_030 Hb_010534_040--Hb_001352_030 Hb_010534_040--Hb_001606_010 Hb_010534_040--Hb_000645_260 Hb_002890_160 Hb_002890_160 Hb_010534_040--Hb_002890_160 Hb_060534_010 Hb_060534_010 Hb_012833_010--Hb_060534_010 Hb_004117_370 Hb_004117_370 Hb_012833_010--Hb_004117_370 Hb_012833_010--Hb_015934_060 Hb_012833_010--Hb_000982_100 Hb_012833_010--Hb_000313_250 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_110266_010 Hb_110266_010 Hb_000313_250--Hb_110266_010 Hb_092516_010 Hb_092516_010 Hb_000313_250--Hb_092516_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_021443_060 Hb_021443_060 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_000836_090 Hb_000836_090 Hb_033006_020--Hb_000836_090 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_033006_020--Hb_001377_120 Hb_007130_020 Hb_007130_020 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.620355 2.89217 1.60503 0.0647342 0.0242563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503625 0.0396101 0.0729318 0.0955628 2.1076

CAGE analysis