Hb_014783_010

Information

Type -
Description -
Location Contig14783: 1214-2050
Sequence    

Annotation

kegg
ID rcu:RCOM_0390310
description cold-inducible RNA binding protein, putative
nr
ID XP_002533105.1
description cold-inducible RNA binding protein, putative [Ricinus communis]
swissprot
ID P60825
description Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1
trembl
ID B9T4D6
description Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cold-inducible rna-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12087: 1502-1948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014783_010 0.0 - - cold-inducible RNA binding protein, putative [Ricinus communis]
2 Hb_000268_010 0.1090451395 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000186_190 0.1318028227 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
4 Hb_003943_130 0.1318537028 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
5 Hb_002289_120 0.1330813135 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
6 Hb_001357_100 0.1341875438 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
7 Hb_000101_270 0.1367323119 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
8 Hb_001817_090 0.1392098692 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
9 Hb_178227_010 0.1408608042 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
10 Hb_000010_210 0.1422946391 - - PREDICTED: centromere protein X [Jatropha curcas]
11 Hb_000220_130 0.1436571696 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
12 Hb_078185_010 0.1458365069 - - -
13 Hb_002983_010 0.1463193783 - - F-box family protein [Populus trichocarpa]
14 Hb_019249_010 0.146790597 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
15 Hb_005653_080 0.1500225676 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_003371_180 0.1501828312 - - -
17 Hb_000465_040 0.1517370235 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
18 Hb_000679_300 0.1530769566 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
19 Hb_064264_010 0.1538194734 - - hypothetical protein [Zea mays]
20 Hb_002900_160 0.1540621367 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_014783_010 Hb_014783_010 Hb_000268_010 Hb_000268_010 Hb_014783_010--Hb_000268_010 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_003943_130 Hb_003943_130 Hb_014783_010--Hb_003943_130 Hb_002289_120 Hb_002289_120 Hb_014783_010--Hb_002289_120 Hb_001357_100 Hb_001357_100 Hb_014783_010--Hb_001357_100 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270 Hb_000268_010--Hb_003943_130 Hb_082407_010 Hb_082407_010 Hb_000268_010--Hb_082407_010 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_000268_010--Hb_002289_120 Hb_003544_020 Hb_003544_020 Hb_000186_190--Hb_003544_020 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_005773_060 Hb_005773_060 Hb_000186_190--Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_001369_640 Hb_001369_640 Hb_003943_130--Hb_001369_640 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_002289_120--Hb_000152_420 Hb_002289_120--Hb_001369_640 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_002289_120--Hb_003878_010 Hb_000584_020 Hb_000584_020 Hb_001357_100--Hb_000584_020 Hb_000473_020 Hb_000473_020 Hb_001357_100--Hb_000473_020 Hb_178227_010 Hb_178227_010 Hb_001357_100--Hb_178227_010 Hb_003536_110 Hb_003536_110 Hb_001357_100--Hb_003536_110 Hb_001357_100--Hb_000268_010 Hb_003939_080 Hb_003939_080 Hb_000101_270--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_000101_270--Hb_001946_210 Hb_002868_010 Hb_002868_010 Hb_000101_270--Hb_002868_010 Hb_064264_010 Hb_064264_010 Hb_000101_270--Hb_064264_010 Hb_070986_010 Hb_070986_010 Hb_000101_270--Hb_070986_010 Hb_000000_160 Hb_000000_160 Hb_000101_270--Hb_000000_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.872 59.6742 68.7385 141.805 86.8406 110.511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.073 257.948 32.8831 20.2877 11.6138

CAGE analysis