Hb_014834_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig14834: 14008-14979
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15790g
description hypothetical protein
nr
ID XP_012069986.1
description PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID A0A067L5V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03406 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12168: 12869-14135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_010 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
2 Hb_011379_010 0.1599755499 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_004162_260 0.1602806038 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
4 Hb_000914_170 0.1982566007 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
5 Hb_000676_340 0.2056141765 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000049_110 0.2104696367 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
7 Hb_001045_040 0.2127647583 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
8 Hb_002260_030 0.2172155083 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
9 Hb_004672_030 0.2249989061 - - proline oxidase [Manihot esculenta]
10 Hb_008948_100 0.2282194155 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
11 Hb_001059_160 0.2293495482 - - hexose transporter 1 [Hevea brasiliensis]
12 Hb_002157_040 0.2303023292 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
13 Hb_003581_300 0.231030318 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
14 Hb_014497_120 0.2311260177 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
15 Hb_006018_060 0.2327536111 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
16 Hb_007110_010 0.234481002 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
17 Hb_000796_010 0.2353871584 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
18 Hb_033594_070 0.2393632657 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
19 Hb_000008_360 0.240289461 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
20 Hb_003126_130 0.2415972343 - - inositol-1-monophosphatase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_014834_010 Hb_014834_010 Hb_011379_010 Hb_011379_010 Hb_014834_010--Hb_011379_010 Hb_004162_260 Hb_004162_260 Hb_014834_010--Hb_004162_260 Hb_000914_170 Hb_000914_170 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_001045_040 Hb_001045_040 Hb_014834_010--Hb_001045_040 Hb_007110_010 Hb_007110_010 Hb_011379_010--Hb_007110_010 Hb_004672_030 Hb_004672_030 Hb_011379_010--Hb_004672_030 Hb_002836_120 Hb_002836_120 Hb_011379_010--Hb_002836_120 Hb_140439_010 Hb_140439_010 Hb_011379_010--Hb_140439_010 Hb_011379_010--Hb_004162_260 Hb_002936_080 Hb_002936_080 Hb_004162_260--Hb_002936_080 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_000914_170--Hb_002260_030 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_006018_060 Hb_006018_060 Hb_000676_340--Hb_006018_060 Hb_002774_050 Hb_002774_050 Hb_000676_340--Hb_002774_050 Hb_000676_340--Hb_002260_030 Hb_003581_300 Hb_003581_300 Hb_000676_340--Hb_003581_300 Hb_001123_210 Hb_001123_210 Hb_000676_340--Hb_001123_210 Hb_000178_120 Hb_000178_120 Hb_000676_340--Hb_000178_120 Hb_001488_030 Hb_001488_030 Hb_000049_110--Hb_001488_030 Hb_046823_010 Hb_046823_010 Hb_000049_110--Hb_046823_010 Hb_003411_090 Hb_003411_090 Hb_000049_110--Hb_003411_090 Hb_000525_050 Hb_000525_050 Hb_000049_110--Hb_000525_050 Hb_000796_010 Hb_000796_010 Hb_000049_110--Hb_000796_010 Hb_001250_070 Hb_001250_070 Hb_000049_110--Hb_001250_070 Hb_001045_040--Hb_002936_080 Hb_000329_550 Hb_000329_550 Hb_001045_040--Hb_000329_550 Hb_008948_100 Hb_008948_100 Hb_001045_040--Hb_008948_100 Hb_001045_040--Hb_000676_340 Hb_001252_220 Hb_001252_220 Hb_001045_040--Hb_001252_220 Hb_003462_160 Hb_003462_160 Hb_001045_040--Hb_003462_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4973 2.10952 13.006 9.11097 0.265306 1.41197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0795 7.80487 11.228 1.03035 6.91302

CAGE analysis