Hb_014834_030

Information

Type -
Description -
Location Contig14834: 25797-26456
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12169: 25886-28279 , PASA_asmbl_12172: 25804-28460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_030 0.0 - - -
2 Hb_001935_150 0.0892411007 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
3 Hb_000367_210 0.0921440965 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
4 Hb_002843_210 0.096642764 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
5 Hb_187083_010 0.1011988762 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
6 Hb_003561_030 0.1059098009 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_001158_150 0.1078550763 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
8 Hb_000025_240 0.1090408364 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
9 Hb_003018_050 0.111061432 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
10 Hb_172706_030 0.1131341702 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
11 Hb_006452_040 0.1141739674 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
12 Hb_011161_050 0.1166802562 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
13 Hb_140543_010 0.118163922 - - -
14 Hb_001085_010 0.1190125265 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
15 Hb_004007_180 0.1242366142 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_003663_070 0.1243655318 - - -
17 Hb_000045_250 0.1267163144 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
18 Hb_130235_010 0.1270596792 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
19 Hb_008748_020 0.1270794812 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
20 Hb_006541_020 0.1277045558 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_014834_030 Hb_014834_030 Hb_001935_150 Hb_001935_150 Hb_014834_030--Hb_001935_150 Hb_000367_210 Hb_000367_210 Hb_014834_030--Hb_000367_210 Hb_002843_210 Hb_002843_210 Hb_014834_030--Hb_002843_210 Hb_187083_010 Hb_187083_010 Hb_014834_030--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_000367_210--Hb_187083_010 Hb_000163_130 Hb_000163_130 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_000367_210--Hb_003561_030 Hb_000820_130 Hb_000820_130 Hb_000367_210--Hb_000820_130 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_002843_210--Hb_003561_030 Hb_002843_210--Hb_000367_210 Hb_002843_210--Hb_187083_010 Hb_002025_300 Hb_002025_300 Hb_002843_210--Hb_002025_300 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_187083_010--Hb_003561_030 Hb_000236_460 Hb_000236_460 Hb_187083_010--Hb_000236_460 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_003561_030--Hb_011161_050 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_003018_050 Hb_003018_050 Hb_001158_150--Hb_003018_050 Hb_005278_020 Hb_005278_020 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_006452_040 Hb_006452_040 Hb_001158_150--Hb_006452_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1154 2.97137 4.45795 37.1449 7.50812 31.8062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.4421 84.1546 31.8831 11.0805 7.83484

CAGE analysis