Hb_014834_050

Information

Type -
Description -
Location Contig14834: 31679-38406
Sequence    

Annotation

kegg
ID rcu:RCOM_1387470
description hypothetical protein
nr
ID XP_002530648.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9SXC9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1387470 PE=4 SV=1
Gene Ontology
ID GO:0005768
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12173: 31698-38377 , PASA_asmbl_12174: 33623-33882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001575_090 0.0735771236 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
3 Hb_003994_230 0.0751357843 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
4 Hb_000120_060 0.0807821945 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
5 Hb_000159_090 0.0836156103 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
6 Hb_007460_020 0.0839542337 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
7 Hb_023732_030 0.0862416675 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
8 Hb_022115_020 0.0863041082 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
9 Hb_000050_200 0.0866807681 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
10 Hb_000603_150 0.0870774764 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
11 Hb_001159_130 0.0928450315 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
12 Hb_000120_670 0.0938267298 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
13 Hb_001252_120 0.094083341 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
14 Hb_000025_180 0.0943705493 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
15 Hb_000270_490 0.0955739481 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
16 Hb_155159_020 0.0964881759 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
17 Hb_003683_020 0.0967110833 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000468_060 0.0968584735 - - ku P70 DNA helicase, putative [Ricinus communis]
19 Hb_000923_010 0.0972604132 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
20 Hb_006588_200 0.0982418548 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_014834_050 Hb_014834_050 Hb_001575_090 Hb_001575_090 Hb_014834_050--Hb_001575_090 Hb_003994_230 Hb_003994_230 Hb_014834_050--Hb_003994_230 Hb_000120_060 Hb_000120_060 Hb_014834_050--Hb_000120_060 Hb_000159_090 Hb_000159_090 Hb_014834_050--Hb_000159_090 Hb_007460_020 Hb_007460_020 Hb_014834_050--Hb_007460_020 Hb_023732_030 Hb_023732_030 Hb_014834_050--Hb_023732_030 Hb_000019_030 Hb_000019_030 Hb_001575_090--Hb_000019_030 Hb_000468_060 Hb_000468_060 Hb_001575_090--Hb_000468_060 Hb_000120_670 Hb_000120_670 Hb_001575_090--Hb_000120_670 Hb_011671_240 Hb_011671_240 Hb_001575_090--Hb_011671_240 Hb_003918_010 Hb_003918_010 Hb_001575_090--Hb_003918_010 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_003693_070 Hb_003693_070 Hb_000120_060--Hb_003693_070 Hb_000270_490 Hb_000270_490 Hb_000120_060--Hb_000270_490 Hb_010142_030 Hb_010142_030 Hb_000120_060--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_000120_060--Hb_000808_280 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_007460_020--Hb_000159_090 Hb_001159_130 Hb_001159_130 Hb_007460_020--Hb_001159_130 Hb_007460_020--Hb_010964_040 Hb_026198_070 Hb_026198_070 Hb_007460_020--Hb_026198_070 Hb_000116_270 Hb_000116_270 Hb_007460_020--Hb_000116_270 Hb_003376_330 Hb_003376_330 Hb_023732_030--Hb_003376_330 Hb_073973_100 Hb_073973_100 Hb_023732_030--Hb_073973_100 Hb_000556_120 Hb_000556_120 Hb_023732_030--Hb_000556_120 Hb_000907_110 Hb_000907_110 Hb_023732_030--Hb_000907_110 Hb_000431_170 Hb_000431_170 Hb_023732_030--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_023732_030--Hb_002197_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97146 4.97774 6.88855 11.5037 9.55072 8.46988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28034 7.0323 9.95274 10.6083 3.87165

CAGE analysis