Hb_014834_150

Information

Type -
Description -
Location Contig14834: 88703-96389
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07600g
description POPTRDRAFT_817168; hypothetical protein
nr
ID XP_012070013.1
description PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q84V22
description Phosphatidylserine decarboxylase proenzyme 1, mitochondrial OS=Arabidopsis thaliana GN=PSD1 PE=2 SV=1
trembl
ID A0A067KUS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03418 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial phosphatidylserine decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12186: 88882-96451 , PASA_asmbl_12187: 88321-88989 , PASA_asmbl_12188: 92671-93067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_150 0.0 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_003861_060 0.0421673781 - - PREDICTED: treacle protein [Jatropha curcas]
3 Hb_003513_010 0.0510103076 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
4 Hb_000816_250 0.0514509561 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
5 Hb_003647_140 0.0515130898 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
6 Hb_003428_010 0.0541523171 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_004052_080 0.0581252043 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000336_210 0.0591917033 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
9 Hb_000905_110 0.0592329687 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
10 Hb_001946_400 0.0597070401 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
11 Hb_000976_140 0.0597655283 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
12 Hb_001456_060 0.0598663761 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
13 Hb_002849_130 0.0604271594 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
14 Hb_002986_100 0.0610508816 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
15 Hb_000976_120 0.0618159076 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
16 Hb_000339_040 0.0622320307 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_003938_090 0.0622679264 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005867_070 0.0643071221 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001021_150 0.0646992691 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
20 Hb_164390_010 0.0650638603 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_014834_150 Hb_014834_150 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003861_060--Hb_003428_010 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_007007_120 Hb_007007_120 Hb_003513_010--Hb_007007_120 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_002889_010 Hb_002889_010 Hb_000816_250--Hb_002889_010 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_000976_120 Hb_000976_120 Hb_003647_140--Hb_000976_120 Hb_003647_140--Hb_003513_010 Hb_003647_140--Hb_001946_400 Hb_003428_010--Hb_004052_080 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09531 5.91892 8.83754 6.94094 6.15491 5.89563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58783 8.44478 5.13631 5.96828 7.17457

CAGE analysis