Hb_014881_020

Information

Type -
Description -
Location Contig14881: 24279-25010
Sequence    

Annotation

kegg
ID rcu:RCOM_0853480
description Protein P21, putative
nr
ID XP_002517440.1
description Protein P21, putative [Ricinus communis]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID B9RUJ5
description Protein P21, putative OS=Ricinus communis GN=RCOM_0853480 PE=4 SV=1
Gene Ontology
ID GO:0010413
description thaumatin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12348: 24153-26171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014881_020 0.0 - - Protein P21, putative [Ricinus communis]
2 Hb_001123_080 0.0569765091 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006018_020 0.0622949798 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011344_110 0.0664230338 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
5 Hb_000201_060 0.0699429352 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
6 Hb_000816_170 0.0716294094 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
7 Hb_001232_170 0.0761422654 - - sulfate transporter, putative [Ricinus communis]
8 Hb_000012_340 0.0781627273 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
9 Hb_004807_070 0.0835408712 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
10 Hb_000628_070 0.0857860118 - - -
11 Hb_000244_290 0.0865779013 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_001386_070 0.0868528393 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
13 Hb_000816_090 0.0889991939 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
14 Hb_012180_070 0.0906247351 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000358_070 0.090655207 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
16 Hb_001401_130 0.0918118221 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
17 Hb_000754_010 0.0936206177 - - unnamed protein product [Vitis vinifera]
18 Hb_005396_020 0.0957446606 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
19 Hb_006570_170 0.0963533312 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
20 Hb_001343_060 0.0978016815 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_014881_020 Hb_014881_020 Hb_001123_080 Hb_001123_080 Hb_014881_020--Hb_001123_080 Hb_006018_020 Hb_006018_020 Hb_014881_020--Hb_006018_020 Hb_011344_110 Hb_011344_110 Hb_014881_020--Hb_011344_110 Hb_000201_060 Hb_000201_060 Hb_014881_020--Hb_000201_060 Hb_000816_170 Hb_000816_170 Hb_014881_020--Hb_000816_170 Hb_001232_170 Hb_001232_170 Hb_014881_020--Hb_001232_170 Hb_001123_080--Hb_006018_020 Hb_001123_080--Hb_001232_170 Hb_000012_340 Hb_000012_340 Hb_001123_080--Hb_000012_340 Hb_001123_080--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_001123_080--Hb_000754_010 Hb_006018_020--Hb_000754_010 Hb_006018_020--Hb_001232_170 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_006018_020--Hb_011344_110 Hb_000244_290 Hb_000244_290 Hb_011344_110--Hb_000244_290 Hb_001343_060 Hb_001343_060 Hb_011344_110--Hb_001343_060 Hb_011344_110--Hb_000628_070 Hb_011344_110--Hb_001232_170 Hb_003090_250 Hb_003090_250 Hb_000201_060--Hb_003090_250 Hb_000201_060--Hb_000754_010 Hb_000358_070 Hb_000358_070 Hb_000201_060--Hb_000358_070 Hb_006061_020 Hb_006061_020 Hb_000201_060--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080 Hb_000816_170--Hb_000358_070 Hb_000816_170--Hb_000012_340 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_000816_170--Hb_001343_060 Hb_000816_170--Hb_000201_060 Hb_001232_170--Hb_000628_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.56215 2.39702 191.62 0.225406 0.0419931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0242862 14.2689

CAGE analysis