Hb_014967_020

Information

Type -
Description -
Location Contig14967: 32092-45339
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014967_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000258_210 0.0393812787 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
3 Hb_009641_040 0.0779308819 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
4 Hb_065521_010 0.0915746787 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
5 Hb_059000_010 0.1002823362 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
6 Hb_007875_020 0.1051640541 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
7 Hb_004607_160 0.1074770028 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
8 Hb_001109_130 0.111405743 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
9 Hb_001141_160 0.1124801269 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_000866_190 0.1170296815 - - transcription factor, putative [Ricinus communis]
11 Hb_007850_110 0.1190082475 - - MADS-box transcription factor 3 [Hevea brasiliensis]
12 Hb_033772_060 0.1202220042 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007386_030 0.1208688776 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
14 Hb_004122_060 0.1261703047 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
15 Hb_015306_010 0.1266271897 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
16 Hb_002448_020 0.1293388504 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_005332_050 0.1293910286 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
18 Hb_144449_010 0.1305475192 - - Potassium transporter, putative [Ricinus communis]
19 Hb_001778_040 0.1305722091 - - hypothetical protein VITISV_021035 [Vitis vinifera]
20 Hb_004943_010 0.1316517285 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_014967_020 Hb_014967_020 Hb_000258_210 Hb_000258_210 Hb_014967_020--Hb_000258_210 Hb_009641_040 Hb_009641_040 Hb_014967_020--Hb_009641_040 Hb_065521_010 Hb_065521_010 Hb_014967_020--Hb_065521_010 Hb_059000_010 Hb_059000_010 Hb_014967_020--Hb_059000_010 Hb_007875_020 Hb_007875_020 Hb_014967_020--Hb_007875_020 Hb_004607_160 Hb_004607_160 Hb_014967_020--Hb_004607_160 Hb_001109_130 Hb_001109_130 Hb_000258_210--Hb_001109_130 Hb_000258_210--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_000258_210--Hb_004943_010 Hb_000258_210--Hb_009641_040 Hb_000258_210--Hb_007875_020 Hb_007237_080 Hb_007237_080 Hb_009641_040--Hb_007237_080 Hb_003894_180 Hb_003894_180 Hb_009641_040--Hb_003894_180 Hb_004307_070 Hb_004307_070 Hb_009641_040--Hb_004307_070 Hb_003633_170 Hb_003633_170 Hb_009641_040--Hb_003633_170 Hb_065521_010--Hb_007875_020 Hb_029510_090 Hb_029510_090 Hb_065521_010--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_168319_060 Hb_168319_060 Hb_065521_010--Hb_168319_060 Hb_007386_030 Hb_007386_030 Hb_065521_010--Hb_007386_030 Hb_001141_160 Hb_001141_160 Hb_059000_010--Hb_001141_160 Hb_004122_060 Hb_004122_060 Hb_059000_010--Hb_004122_060 Hb_009554_030 Hb_009554_030 Hb_059000_010--Hb_009554_030 Hb_000946_050 Hb_000946_050 Hb_059000_010--Hb_000946_050 Hb_001544_070 Hb_001544_070 Hb_059000_010--Hb_001544_070 Hb_014250_010 Hb_014250_010 Hb_059000_010--Hb_014250_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007875_020--Hb_007386_030 Hb_007875_020--Hb_029510_090 Hb_007875_020--Hb_168319_060 Hb_007875_020--Hb_002448_020 Hb_000836_030 Hb_000836_030 Hb_004607_160--Hb_000836_030 Hb_000130_480 Hb_000130_480 Hb_004607_160--Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_004607_160--Hb_002635_010 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_007850_110 Hb_007850_110 Hb_004607_160--Hb_007850_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00609633 0.00822384 0.0156698 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0130824 0.0142107

CAGE analysis