Hb_015001_020

Information

Type -
Description -
Location Contig15001: 42566-60833
Sequence    

Annotation

kegg
ID rcu:RCOM_1269060
description lupus la ribonucleoprotein, putative
nr
ID XP_012081920.1
description PREDICTED: la-related protein 6B [Jatropha curcas]
swissprot
ID O80567
description La-related protein 6B OS=Arabidopsis thaliana GN=LARP6B PE=1 SV=2
trembl
ID A0A067K088
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19265 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12548: 42592-60387 , PASA_asmbl_12549: 48658-48915 , PASA_asmbl_12551: 59663-59907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015001_020 0.0 - - PREDICTED: la-related protein 6B [Jatropha curcas]
2 Hb_002097_110 0.0549819068 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004662_030 0.059842619 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
4 Hb_028872_140 0.0604102261 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_000032_570 0.0652563409 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
6 Hb_000853_110 0.0678756625 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
7 Hb_005062_070 0.0683235294 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
8 Hb_007426_230 0.0702961995 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
9 Hb_001454_210 0.0706476706 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
10 Hb_000532_070 0.0716472766 - - PREDICTED: exosome complex component RRP42-like [Jatropha curcas]
11 Hb_007508_070 0.0727378905 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_001030_120 0.0728059015 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_015306_020 0.074004056 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
14 Hb_009111_050 0.0779692827 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
15 Hb_004195_160 0.0790226642 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
16 Hb_133271_020 0.0801194877 - - prohibitin, putative [Ricinus communis]
17 Hb_000567_260 0.0801194952 - - BnaA09g41440D [Brassica napus]
18 Hb_003976_010 0.0820181912 - - methionine aminopeptidase, putative [Ricinus communis]
19 Hb_001671_020 0.0825030941 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
20 Hb_003020_230 0.0827924445 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_015001_020 Hb_015001_020 Hb_002097_110 Hb_002097_110 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_000032_570 Hb_000032_570 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_002097_110--Hb_004662_030 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_000853_110--Hb_000032_570 Hb_002762_060 Hb_002762_060 Hb_000853_110--Hb_002762_060 Hb_002272_250 Hb_002272_250 Hb_000853_110--Hb_002272_250 Hb_000853_110--Hb_001030_120 Hb_000853_110--Hb_007426_230 Hb_005062_070--Hb_001454_210 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_005062_070--Hb_009111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.731 57.6211 24.9881 39.0217 151.273 184.525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.546 183.056 179.13 100.352 44.5707

CAGE analysis