Hb_015001_030

Information

Type -
Description -
Location Contig15001: 73665-79013
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00470g
description POPTRDRAFT_654333; inosine-uridine preferring nucleoside hydrolase family protein
nr
ID XP_002310384.1
description inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
swissprot
ID Q8LAC4
description Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2 PE=2 SV=1
trembl
ID B9HGC2
description Inosine-uridine preferring nucleoside hydrolase family protein OS=Populus trichocarpa GN=POPTR_0007s00470g PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable uridine nucleosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12552: 73679-75188 , PASA_asmbl_12553: 73669-78885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015001_030 0.0 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
2 Hb_001638_150 0.0600677952 - - acyltransferase, putative [Ricinus communis]
3 Hb_014250_010 0.0848369515 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
4 Hb_021346_020 0.0880269858 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
5 Hb_001135_010 0.0930282038 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
6 Hb_093218_010 0.1007198329 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
7 Hb_003656_090 0.1034530458 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
8 Hb_001104_020 0.1037822114 - - DNA binding protein, putative [Ricinus communis]
9 Hb_004162_320 0.1039921151 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
10 Hb_005766_010 0.1044703163 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000866_190 0.1055137026 - - transcription factor, putative [Ricinus communis]
12 Hb_001440_010 0.1070150014 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
13 Hb_002918_120 0.1072426213 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000714_060 0.1072802147 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
15 Hb_008175_050 0.1074710503 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
16 Hb_000834_220 0.1076354047 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
17 Hb_005731_070 0.1076549937 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000941_010 0.1099299415 - - hypothetical protein RCOM_0504460 [Ricinus communis]
19 Hb_005892_040 0.1102919153 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
20 Hb_001141_160 0.1138192836 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_015001_030 Hb_015001_030 Hb_001638_150 Hb_001638_150 Hb_015001_030--Hb_001638_150 Hb_014250_010 Hb_014250_010 Hb_015001_030--Hb_014250_010 Hb_021346_020 Hb_021346_020 Hb_015001_030--Hb_021346_020 Hb_001135_010 Hb_001135_010 Hb_015001_030--Hb_001135_010 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010 Hb_003656_090 Hb_003656_090 Hb_015001_030--Hb_003656_090 Hb_001638_150--Hb_014250_010 Hb_001440_010 Hb_001440_010 Hb_001638_150--Hb_001440_010 Hb_000010_440 Hb_000010_440 Hb_001638_150--Hb_000010_440 Hb_003092_020 Hb_003092_020 Hb_001638_150--Hb_003092_020 Hb_001638_150--Hb_003656_090 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_009554_030 Hb_009554_030 Hb_014250_010--Hb_009554_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_014250_010--Hb_000866_190 Hb_002918_120 Hb_002918_120 Hb_021346_020--Hb_002918_120 Hb_021346_020--Hb_014250_010 Hb_004446_060 Hb_004446_060 Hb_021346_020--Hb_004446_060 Hb_021346_020--Hb_005766_010 Hb_000616_010 Hb_000616_010 Hb_021346_020--Hb_000616_010 Hb_004162_320 Hb_004162_320 Hb_001135_010--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_001135_010--Hb_003506_010 Hb_001135_010--Hb_014250_010 Hb_001135_010--Hb_000866_190 Hb_001135_010--Hb_002918_120 Hb_000714_060 Hb_000714_060 Hb_093218_010--Hb_000714_060 Hb_032260_060 Hb_032260_060 Hb_093218_010--Hb_032260_060 Hb_001104_020 Hb_001104_020 Hb_093218_010--Hb_001104_020 Hb_000951_090 Hb_000951_090 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_003656_090--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_003656_090--Hb_000834_220 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103052 5.70404 18.8128 18.3201 0.0153371 0.0290401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0697971 0.192179 0 13.8821 10.7519

CAGE analysis