Hb_015026_050

Information

Type -
Description -
Location Contig15026: 21867-28429
Sequence    

Annotation

kegg
ID rcu:RCOM_1063020
description XPA-binding protein, putative
nr
ID XP_002521433.1
description XPA-binding protein, putative [Ricinus communis]
swissprot
ID Q99PK0
description Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1
trembl
ID B9S614
description XPA-binding protein, putative OS=Ricinus communis GN=RCOM_1063020 PE=4 SV=1
Gene Ontology
ID GO:0005622
description pre-mrna-splicing factor syf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12593: 19681-21259 , PASA_asmbl_12594: 21966-22322 , PASA_asmbl_12595: 22323-28404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_050 0.0 - - XPA-binding protein, putative [Ricinus communis]
2 Hb_000320_380 0.0400714173 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
3 Hb_147737_010 0.050210254 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
4 Hb_002221_050 0.0584003708 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
5 Hb_000329_130 0.064108356 - - beta-tubulin cofactor d, putative [Ricinus communis]
6 Hb_007885_070 0.0684614541 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
7 Hb_003847_120 0.0702411662 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_010315_090 0.0717403369 - - suppressor of ty, putative [Ricinus communis]
9 Hb_020665_030 0.0740567069 - - conserved hypothetical protein [Ricinus communis]
10 Hb_140049_020 0.0760728212 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
11 Hb_001771_120 0.0774315782 - - K+ transport growth defect-like protein [Hevea brasiliensis]
12 Hb_002349_050 0.0789749225 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
13 Hb_028872_120 0.0796271906 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_006915_060 0.0811976327 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
15 Hb_010193_050 0.0817124455 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000343_210 0.0817983159 - - ran-binding protein, putative [Ricinus communis]
17 Hb_000475_020 0.0821518929 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
18 Hb_025477_060 0.0834808337 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
19 Hb_003216_080 0.0841873782 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
20 Hb_000320_200 0.0842825377 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_015026_050 Hb_015026_050 Hb_000320_380 Hb_000320_380 Hb_015026_050--Hb_000320_380 Hb_147737_010 Hb_147737_010 Hb_015026_050--Hb_147737_010 Hb_002221_050 Hb_002221_050 Hb_015026_050--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_015026_050--Hb_000329_130 Hb_007885_070 Hb_007885_070 Hb_015026_050--Hb_007885_070 Hb_003847_120 Hb_003847_120 Hb_015026_050--Hb_003847_120 Hb_000320_380--Hb_002221_050 Hb_019153_020 Hb_019153_020 Hb_000320_380--Hb_019153_020 Hb_000320_380--Hb_007885_070 Hb_140049_020 Hb_140049_020 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_147737_010--Hb_000329_130 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_007885_070--Hb_000529_260 Hb_007885_070--Hb_019153_020 Hb_007885_070--Hb_000424_010 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_006915_060 Hb_006915_060 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.503 20.1547 10.5641 8.24691 26.2174 29.0715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33579 7.30717 13.2861 9.19453 11.6456

CAGE analysis