Hb_015026_060

Information

Type -
Description -
Location Contig15026: 30947-32413
Sequence    

Annotation

kegg
ID rcu:RCOM_1063000
description hypothetical protein
nr
ID XP_012091513.1
description PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12596: 30766-32413
cDNA
(Sanger)
(ID:Location)		 009_N18.ab1: 31324-32412 , 012_P03.ab1: 31362-32413 , 021_L09.ab1: 31349-32413 , 043_L17.ab1: 31346-32413

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_060 0.0 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
2 Hb_083043_010 0.1139651143 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_000424_230 0.1341095824 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
4 Hb_001279_330 0.134508849 - - Protein bem46, putative [Ricinus communis]
5 Hb_000613_100 0.1358269245 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
6 Hb_005368_010 0.1383949933 - - PREDICTED: umecyanin-like [Jatropha curcas]
7 Hb_001040_120 0.1391244074 - - allantoinase, putative [Ricinus communis]
8 Hb_023327_030 0.1391255354 - - osmotin-like protein [Hevea brasiliensis]
9 Hb_008406_140 0.1398244781 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_002070_070 0.1431439966 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003716_020 0.1442688157 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
12 Hb_005271_080 0.1469458216 - - receptor kinase, putative [Ricinus communis]
13 Hb_126295_010 0.1480322083 - - PREDICTED: protein SEH1 [Jatropha curcas]
14 Hb_000125_040 0.149469324 - - -
15 Hb_011497_010 0.1499716833 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
16 Hb_004218_070 0.1513855352 - - annexin [Manihot esculenta]
17 Hb_150204_010 0.1515709206 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_073973_160 0.154701838 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
19 Hb_079326_010 0.1548916991 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
20 Hb_003581_020 0.1562685175 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_015026_060 Hb_015026_060 Hb_083043_010 Hb_083043_010 Hb_015026_060--Hb_083043_010 Hb_000424_230 Hb_000424_230 Hb_015026_060--Hb_000424_230 Hb_001279_330 Hb_001279_330 Hb_015026_060--Hb_001279_330 Hb_000613_100 Hb_000613_100 Hb_015026_060--Hb_000613_100 Hb_005368_010 Hb_005368_010 Hb_015026_060--Hb_005368_010 Hb_001040_120 Hb_001040_120 Hb_015026_060--Hb_001040_120 Hb_003711_040 Hb_003711_040 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_000424_230--Hb_005368_010 Hb_001689_020 Hb_001689_020 Hb_000424_230--Hb_001689_020 Hb_015763_030 Hb_015763_030 Hb_000424_230--Hb_015763_030 Hb_002942_080 Hb_002942_080 Hb_000424_230--Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_000424_230--Hb_007668_040 Hb_000424_230--Hb_001279_330 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_000849_100 Hb_000849_100 Hb_000613_100--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_000613_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000613_100--Hb_003716_020 Hb_001582_030 Hb_001582_030 Hb_000613_100--Hb_001582_030 Hb_002235_320 Hb_002235_320 Hb_000613_100--Hb_002235_320 Hb_000261_520 Hb_000261_520 Hb_000613_100--Hb_000261_520 Hb_079326_010 Hb_079326_010 Hb_005368_010--Hb_079326_010 Hb_001341_050 Hb_001341_050 Hb_005368_010--Hb_001341_050 Hb_005368_010--Hb_005271_080 Hb_000116_170 Hb_000116_170 Hb_005368_010--Hb_000116_170 Hb_000029_320 Hb_000029_320 Hb_001040_120--Hb_000029_320 Hb_010180_040 Hb_010180_040 Hb_001040_120--Hb_010180_040 Hb_002070_070 Hb_002070_070 Hb_001040_120--Hb_002070_070 Hb_002159_040 Hb_002159_040 Hb_001040_120--Hb_002159_040 Hb_001040_120--Hb_015763_030 Hb_011497_010 Hb_011497_010 Hb_001040_120--Hb_011497_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.153 50.5259 43.553 149.405 220.428 271.943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.7836 27.2849 64.7932 49.6621 10.9201

CAGE analysis