Hb_015044_010

Information

Type -
Description -
Location Contig15044: 12298-14097
Sequence    

Annotation

kegg
ID cit:102613969
description tropinone reductase homolog At1g07440-like
nr
ID KDP24566.1
description hypothetical protein JCGZ_25130 [Jatropha curcas]
swissprot
ID Q9ZW04
description Tropinone reductase homolog At2g29170 OS=Arabidopsis thaliana GN=At2g29170 PE=3 SV=1
trembl
ID A0A067JKQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25130 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12669: 12172-14210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015044_010 0.0 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
2 Hb_001014_240 0.0380119545 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
3 Hb_006267_040 0.056475076 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
4 Hb_000128_040 0.0638433332 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
5 Hb_101133_030 0.0733331381 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
6 Hb_000866_060 0.0744281006 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
7 Hb_003937_010 0.0771865812 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
8 Hb_000359_050 0.0781657322 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
9 Hb_000300_110 0.0788581766 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
10 Hb_000962_090 0.0822870461 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
11 Hb_000749_140 0.0843915616 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
12 Hb_000340_280 0.0846080312 - - conserved hypothetical protein [Ricinus communis]
13 Hb_092516_010 0.0854402029 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
14 Hb_124677_010 0.0886854052 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007545_070 0.0899827326 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
16 Hb_001266_010 0.0958810607 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
17 Hb_009476_030 0.0963643812 - - fatty acid desaturase [Manihot esculenta]
18 Hb_001975_120 0.0968336442 - - chlorophyll a/b binding protein type II [Glycine max]
19 Hb_001942_060 0.0980099955 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001233_050 0.0980356268 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_015044_010 Hb_015044_010 Hb_001014_240 Hb_001014_240 Hb_015044_010--Hb_001014_240 Hb_006267_040 Hb_006267_040 Hb_015044_010--Hb_006267_040 Hb_000128_040 Hb_000128_040 Hb_015044_010--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_015044_010--Hb_101133_030 Hb_000866_060 Hb_000866_060 Hb_015044_010--Hb_000866_060 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_000359_050 Hb_000359_050 Hb_001014_240--Hb_000359_050 Hb_000962_090 Hb_000962_090 Hb_001014_240--Hb_000962_090 Hb_001014_240--Hb_000128_040 Hb_001014_240--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_001014_240--Hb_000340_280 Hb_006267_040--Hb_000866_060 Hb_006267_040--Hb_001014_240 Hb_000300_110 Hb_000300_110 Hb_006267_040--Hb_000300_110 Hb_006267_040--Hb_000128_040 Hb_174899_010 Hb_174899_010 Hb_006267_040--Hb_174899_010 Hb_000128_040--Hb_101133_030 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_101133_030--Hb_000340_280 Hb_000749_140 Hb_000749_140 Hb_101133_030--Hb_000749_140 Hb_101133_030--Hb_000359_050 Hb_001233_050 Hb_001233_050 Hb_101133_030--Hb_001233_050 Hb_003651_030 Hb_003651_030 Hb_101133_030--Hb_003651_030 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000866_060--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000866_060--Hb_000300_110 Hb_006618_110 Hb_006618_110 Hb_003937_010--Hb_006618_110 Hb_004994_030 Hb_004994_030 Hb_003937_010--Hb_004994_030 Hb_063405_010 Hb_063405_010 Hb_003937_010--Hb_063405_010 Hb_000155_020 Hb_000155_020 Hb_003937_010--Hb_000155_020 Hb_003937_010--Hb_001014_240 Hb_003777_090 Hb_003777_090 Hb_003937_010--Hb_003777_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.59908 46.1675 12.915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0 0 2.64942 36.7183

CAGE analysis